Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0553.Seq
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0606 - 19164215-19164619                                         30   1.8  
12_02_0210 - 15617770-15618453                                         29   5.5  
01_02_0133 - 11457363-11457561,11458239-11458469,11460117-11461108     29   5.5  
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533...    28   7.3  

>10_08_0606 - 19164215-19164619
          Length = 134

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 303 ASGRLGVPRDHEMPVRSNSPTVAAAPAVPYRPSRKYPHR 187
           AS  +G    ++   RS+SP ++  P VPY  S   P R
Sbjct: 44  ASSSMGCYLVYDAAARSSSPPLSTVPGVPYSDSHSSPGR 82


>12_02_0210 - 15617770-15618453
          Length = 227

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 608 RGHGIVLCILNYLYKYIHYI 667
           RG  ++L I+N L KY+H+I
Sbjct: 11  RGKSVILTIVNLLSKYVHFI 30


>01_02_0133 - 11457363-11457561,11458239-11458469,11460117-11461108
          Length = 473

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -1

Query: 235 GGTGRPVPTLTKISTPYTTYVLFNKLQVFMINDYITITE*LFV*QETSVSCGRRCGGGPT 56
           GG+G+P P  T  S+      L   + V ++N   T T       E  +  GRR   G T
Sbjct: 51  GGSGKPPPPTTSPSSTLVELELAPPMDVVVVNPTTTAT----THDEVELGLGRRNKRGCT 106

Query: 55  ARGTYT 38
              T+T
Sbjct: 107 CTTTHT 112


>05_01_0594 -
           5337804-5337976,5338282-5338436,5338591-5338745,
           5338864-5338992,5339096-5339189,5339293-5339366,
           5339716-5339851,5341546-5341562
          Length = 310

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 639 FNIHKTIP*PLFTEIIT 589
           F IH+T+P PLF+ I+T
Sbjct: 255 FKIHQTVPPPLFSSIVT 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,836
Number of Sequences: 37544
Number of extensions: 263895
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)