Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0553.Seq
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    29   5.0  

>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 380 ISLL*NVLYKIEHCRFAIIVLI*SNARAADSASHAIMKCQCDLTR 246
           IS   N +Y I +C F  I +I    R  DS S  + K  CD  R
Sbjct: 101 ISFALNFIYWIAYCIFTFIGIILDVVRRGDSCSSGMSKEVCDANR 145


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/34 (29%), Positives = 25/34 (73%)
 Frame = +2

Query: 557 NFTYLNKYKNIVMISVNRGHGIVLCILNYLYKYI 658
           ++TY+ KY N+ ++++++ +  V+ +L+ LYK +
Sbjct: 56  SYTYI-KYMNVYLVTISKKNTNVILVLSALYKIV 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,096
Number of Sequences: 27780
Number of extensions: 247303
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)