Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0553.Seq
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.8  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 202 KISTPYTTYVLFNKLQVFMINDYITITE 119
           K  TP+TT  L +  + F    Y+TI E
Sbjct: 11  KPRTPFTTQQLLSLEKKFREKQYLTIAE 38


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 57   VGPPPHRRPQLTLVSCQTNNYSVIV 131
            V  PPH  PQ+TL +  TN+ ++ V
Sbjct: 1363 VHAPPHS-PQITLTATTTNSLTMKV 1386


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 318 DLV*RASGRLGVPRDHEMP----VRSNSPTVAAAPAVPYRPSRKYPHRTLP 178
           D+V  +   +G+  D EMP    +  NS T+   P   Y P  +Y H   P
Sbjct: 119 DIVMHSVTSVGI--DLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWP 167


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 569 LNKYKNIVMISVNRGHGIVLCILNYLYK 652
           L KY    MI V     I +C+LN  ++
Sbjct: 312 LGKYLLFTMILVTLSIWITVCVLNVHFR 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,122
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)