Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0552.Seq
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.48 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   1.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   5.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 312 PTPPPIPEVIQRALAYLATAPP 377
           P P P+ EV Q+  +  A APP
Sbjct: 392 PVPQPVEEVTQKPSSTKAPAPP 413


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 434 LTVFLSKLTE*LWPVVFRLWG 372
           +T FLS L +  W + +R +G
Sbjct: 88  ITAFLSVLPQLAWDITYRFYG 108


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 325 QFLKSSSALSHTSPPHPHSLKTTGHNYSVNLLKKTVNS 438
           Q +   + +SH     P    ++ H +S+N L  T  S
Sbjct: 344 QAMLHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAES 381


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 406 NNYGLLFSGCGGAVA 362
           N+YG  +SG GG VA
Sbjct: 389 NHYGYHYSGDGGEVA 403


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 406 NNYGLLFSGCGGAVA 362
           N+YG  +SG GG VA
Sbjct: 337 NHYGYHYSGDGGEVA 351


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 368  GGEVCESALDDFRNWGWCG 312
            GG V    LDDF+N   CG
Sbjct: 2657 GGMVWALDLDDFKNRCGCG 2675


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = +3

Query: 261 LSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPENNRP 398
           ++ +    G  P    +P P         A  Y  +  P+PE+ RP
Sbjct: 184 IALVLPTQGASPLPLLVPIPQRTASTASSASNYSPSQSPEPESVRP 229


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 163 QRRYHFQSHKSIGRTHQARCCSPA 92
           +RR+H   HK  G     R  +PA
Sbjct: 257 RRRHHLVHHKCGGEEEAERAPAPA 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,994
Number of Sequences: 336
Number of extensions: 3250
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)