Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0552.Seq
(590 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 36 0.11
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 36 0.11
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 36 0.11
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 36 0.11
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 36 0.11
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 34 0.43
AL121919-1|CAI21544.2| 1677|Homo sapiens chromosome 20 open read... 33 0.76
BX640870-1|CAE45928.1| 510|Homo sapiens hypothetical protein pr... 30 1.8
AF031588-1|AAC03767.1| 503|Homo sapiens WASP interacting protei... 30 1.9
AC010894-2|AAY14708.1| 503|Homo sapiens unknown protein. 30 1.9
X86019-1|CAA60014.1| 494|Homo sapiens SH3-domain interacting pr... 30 1.9
BC110288-1|AAI10289.1| 403|Homo sapiens WIPF1 protein protein. 30 1.9
AF106062-1|AAD45972.1| 312|Homo sapiens Wiskott-Aldrich syndrom... 30 1.9
AF108461-1|AAF31756.1| 1134|Homo sapiens ubinuclein protein. 31 3.0
AF108460-1|AAF31755.1| 1134|Homo sapiens ubinuclein protein. 31 3.0
AF108459-1|AAF34869.1| 1134|Homo sapiens ubinuclein protein. 31 3.0
BC126396-1|AAI26397.1| 574|Homo sapiens forkhead box J2 protein. 30 5.3
AK123186-1|BAC85550.1| 233|Homo sapiens tein. protein. 30 5.3
AF155133-1|AAK49016.1| 526|Homo sapiens FOXJ2 forkhead factor i... 30 5.3
AF155132-1|AAF65927.1| 574|Homo sapiens FOXJ2 forkhead factor p... 30 5.3
BC057785-1|AAH57785.1| 716|Homo sapiens RSHL1 protein protein. 29 9.3
BC020956-1|AAH20956.1| 924|Homo sapiens SETD5 protein protein. 29 9.3
BC014477-1|AAH14477.1| 328|Homo sapiens homeobox D1 protein. 29 9.3
AK223347-1|BAD97067.1| 717|Homo sapiens radial spokehead-like 1... 29 9.3
AK025478-1|BAB15144.1| 603|Homo sapiens protein ( Homo sapiens ... 29 9.3
AK024384-1|BAB14903.1| 924|Homo sapiens protein ( Homo sapiens ... 29 9.3
AK001569-1|BAA91762.1| 924|Homo sapiens protein ( Homo sapiens ... 29 9.3
AF241528-1|AAG44444.1| 328|Homo sapiens homeobox-containing tra... 29 9.3
AF202118-1|AAG29939.1| 328|Homo sapiens HOX D1 protein protein. 29 9.3
AB051544-1|BAB21848.1| 1409|Homo sapiens KIAA1757 protein protein. 29 9.3
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 35.9 bits (79), Expect = 0.11
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 QSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA-----LQVEGQ 225
Q P+ P KQ SS D ++ S + + + G E PA + G
Sbjct: 319 QRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS--STGPEPPAPTPLLAERHGG 376
Query: 226 FQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 399
P S P +P AS RD P P+ L SS+ S +SPP P K + H
Sbjct: 377 SPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSS-SESSPPSPQPTKVSRH 433
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 35.9 bits (79), Expect = 0.11
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 QSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA-----LQVEGQ 225
Q P+ P KQ SS D ++ S + + + G E PA + G
Sbjct: 319 QRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS--STGPEPPAPTPLLAERHGG 376
Query: 226 FQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 399
P S P +P AS RD P P+ L SS+ S +SPP P K + H
Sbjct: 377 SPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSS-SESSPPSPQPTKVSRH 433
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 35.9 bits (79), Expect = 0.11
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 QSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA-----LQVEGQ 225
Q P+ P KQ SS D ++ S + + + G E PA + G
Sbjct: 284 QRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS--STGPEPPAPTPLLAERHGG 341
Query: 226 FQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 399
P S P +P AS RD P P+ L SS+ S +SPP P K + H
Sbjct: 342 SPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSS-SESSPPSPQPTKVSRH 398
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 35.9 bits (79), Expect = 0.11
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 QSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA-----LQVEGQ 225
Q P+ P KQ SS D ++ S + + + G E PA + G
Sbjct: 109 QRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS--STGPEPPAPTPLLAERHGG 166
Query: 226 FQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 399
P S P +P AS RD P P+ L SS+ S +SPP P K + H
Sbjct: 167 SPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSS-SESSPPSPQPTKVSRH 223
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 35.9 bits (79), Expect = 0.11
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 QSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA-----LQVEGQ 225
Q P+ P KQ SS D ++ S + + + G E PA + G
Sbjct: 367 QRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS--STGPEPPAPTPLLAERHGG 424
Query: 226 FQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 399
P S P +P AS RD P P+ L SS+ S +SPP P K + H
Sbjct: 425 SPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSS-SESSPPSPQPTKVSRH 481
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 33.9 bits (74), Expect = 0.43
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 265 PTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 399
P +P AS RD P P+ L SS+ S +SPP P K + H
Sbjct: 390 PVNPPSEASPTRDRSPPKSPEKLPQSSS-SESSPPSPQPTKVSRH 433
>AL121919-1|CAI21544.2| 1677|Homo sapiens chromosome 20 open reading
frame 174 protein.
Length = 1677
Score = 33.1 bits (72), Expect = 0.76
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Frame = +1
Query: 43 VAVAAPQSPTEPIPILKQESSIEPD----GSYQYSYETG-----NGIS-AAERGALKNIG 192
V+ P PT+P + Q+ +P GS + + + G +G S AA ALK +G
Sbjct: 839 VSAETPGGPTQPASLSSQKQDADPGEVPGGSKESARQVGEPLESSGASLAAASVALKRVG 898
Query: 193 AEEPALQVEGQFQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFL 333
+ A + P+E ++ P +P R S+L D+ + P++L
Sbjct: 899 PRDKATPLHPAAPAPAEHPSLATPPQAP-RVLSALADNAF--SPKYL 942
>BX640870-1|CAE45928.1| 510|Homo sapiens hypothetical protein
protein.
Length = 510
Score = 29.9 bits (64), Expect(2) = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 312 PTPPPIPEVIQRALAYLATAPPQPENNRP 398
P PPP P + ++ A PP P+NN+P
Sbjct: 264 PPPPPPPVGNRPSIHREAVPPPPPQNNKP 292
Score = 20.6 bits (41), Expect(2) = 1.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 297 QGSHLPTPPPIP 332
Q S PTPPP P
Sbjct: 212 QPSPGPTPPPFP 223
>AF031588-1|AAC03767.1| 503|Homo sapiens WASP interacting protein
protein.
Length = 503
Score = 29.9 bits (64), Expect(2) = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 312 PTPPPIPEVIQRALAYLATAPPQPENNRP 398
P PPP P + ++ A PP P+NN+P
Sbjct: 264 PPPPPPPVGNRPSIHREAVPPPPPQNNKP 292
Score = 20.6 bits (41), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 297 QGSHLPTPPPIP 332
Q S PTPPP P
Sbjct: 212 QPSPGPTPPPFP 223
>AC010894-2|AAY14708.1| 503|Homo sapiens unknown protein.
Length = 503
Score = 29.9 bits (64), Expect(2) = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 312 PTPPPIPEVIQRALAYLATAPPQPENNRP 398
P PPP P + ++ A PP P+NN+P
Sbjct: 264 PPPPPPPVGNRPSIHREAVPPPPPQNNKP 292
Score = 20.6 bits (41), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 297 QGSHLPTPPPIP 332
Q S PTPPP P
Sbjct: 212 QPSPGPTPPPFP 223
>X86019-1|CAA60014.1| 494|Homo sapiens SH3-domain interacting
protein protein.
Length = 494
Score = 29.9 bits (64), Expect(2) = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 312 PTPPPIPEVIQRALAYLATAPPQPENNRP 398
P PPP P + ++ A PP P+NN+P
Sbjct: 264 PPPPPPPVGNRPSIHREAVPPPPPQNNKP 292
Score = 20.6 bits (41), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 297 QGSHLPTPPPIP 332
Q S PTPPP P
Sbjct: 212 QPSPGPTPPPFP 223
>BC110288-1|AAI10289.1| 403|Homo sapiens WIPF1 protein protein.
Length = 403
Score = 29.9 bits (64), Expect(2) = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 312 PTPPPIPEVIQRALAYLATAPPQPENNRP 398
P PPP P + ++ A PP P+NN+P
Sbjct: 264 PPPPPPPVGNRPSIHREAVPPPPPQNNKP 292
Score = 20.6 bits (41), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 297 QGSHLPTPPPIP 332
Q S PTPPP P
Sbjct: 212 QPSPGPTPPPFP 223
>AF106062-1|AAD45972.1| 312|Homo sapiens Wiskott-Aldrich syndrome
protein interacting protein protein.
Length = 312
Score = 29.9 bits (64), Expect(2) = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 312 PTPPPIPEVIQRALAYLATAPPQPENNRP 398
P PPP P + ++ A PP P+NN+P
Sbjct: 73 PPPPPPPVGNRPSIHREAVPPPPPQNNKP 101
Score = 20.6 bits (41), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 297 QGSHLPTPPPIP 332
Q S PTPPP P
Sbjct: 21 QPSPGPTPPPFP 32
>AF108461-1|AAF31756.1| 1134|Homo sapiens ubinuclein protein.
Length = 1134
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 265 PTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVNLLKKTVN 435
P++P T+ L H SSSALSH P PHS+ + G +Y N +++
Sbjct: 856 PSAPA-TSGGLSASSSSSHKTPASSSSALSH--PAKPHSVSSAGSSYKNNPFASSIS 909
>AF108460-1|AAF31755.1| 1134|Homo sapiens ubinuclein protein.
Length = 1134
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 265 PTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVNLLKKTVN 435
P++P T+ L H SSSALSH P PHS+ + G +Y N +++
Sbjct: 856 PSAPA-TSGGLSASSSSSHKTPASSSSALSH--PAKPHSVSSAGSSYKNNPFASSIS 909
>AF108459-1|AAF34869.1| 1134|Homo sapiens ubinuclein protein.
Length = 1134
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 265 PTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVNLLKKTVN 435
P++P T+ L H SSSALSH P PHS+ + G +Y N +++
Sbjct: 856 PSAPA-TSGGLSASSSSSHKTPASSSSALSH--PAKPHSVSSAGSSYKNNPFASSIS 909
>BC126396-1|AAI26397.1| 574|Homo sapiens forkhead box J2 protein.
Length = 574
Score = 30.3 bits (65), Expect = 5.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 55 APQSPTEPIPIL-KQESSIEPDGSYQYSYET 144
+P SPT+P L K E+++ DG +YSY T
Sbjct: 43 SPGSPTDPNATLSKDEAAVHQDGKPRYSYAT 73
>AK123186-1|BAC85550.1| 233|Homo sapiens tein. protein.
Length = 233
Score = 30.3 bits (65), Expect = 5.3
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = +1
Query: 31 GLVTVAVAAPQSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPAL 210
G + P + +P+ + S G + S E NG GA + GAE P L
Sbjct: 95 GCIPTPAGTCAPPGQGLPVPFRGSPAASTGRKRRSAERTNGADPRRLGAGRG-GAEPPRL 153
Query: 211 QVEGQFQYPSEDGGTSSCPTSPMRTASSL 297
Q+ G + GG S P R L
Sbjct: 154 QLAGTRGRAAGLGGAHSATDRPRRLCRPL 182
>AF155133-1|AAK49016.1| 526|Homo sapiens FOXJ2 forkhead factor
isoform FOXJ2.S protein.
Length = 526
Score = 30.3 bits (65), Expect = 5.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 55 APQSPTEPIPIL-KQESSIEPDGSYQYSYET 144
+P SPT+P L K E+++ DG +YSY T
Sbjct: 43 SPGSPTDPNATLSKDEAAVHQDGKPRYSYAT 73
>AF155132-1|AAF65927.1| 574|Homo sapiens FOXJ2 forkhead factor
protein.
Length = 574
Score = 30.3 bits (65), Expect = 5.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 55 APQSPTEPIPIL-KQESSIEPDGSYQYSYET 144
+P SPT+P L K E+++ DG +YSY T
Sbjct: 43 SPGSPTDPNATLSKDEAAVHQDGKPRYSYAT 73
>BC057785-1|AAH57785.1| 716|Homo sapiens RSHL1 protein protein.
Length = 716
Score = 29.5 bits (63), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 261 LSYIANENGFQPQGSHLPTPPPIPEVIQRALAYL 362
L ++ +E GF + +P P P+ +Q A AYL
Sbjct: 172 LQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYL 205
>BC020956-1|AAH20956.1| 924|Homo sapiens SETD5 protein protein.
Length = 924
Score = 29.5 bits (63), Expect = 9.3
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Frame = +1
Query: 22 ILFGLVTVAVAAPQSPTEPIPILKQESS-IEPDGSYQYSYETGNG--ISAAERGALKNIG 192
+L V VA SPT I +++S + +G S G + + R + + +
Sbjct: 666 VLRSSVRVAQKGEPSPTWESNITEKDSDPADGEGPETLSSALSKGATVYSPSRYSYQLLQ 725
Query: 193 AEEPALQVEGQFQYPSED--GGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSP 366
+ P + + Q S G + P RT ++LR P H S S+ S++SP
Sbjct: 726 CDSPRTESQSLLQQSSSPFRGHPTQSPGYSYRT-TALRPGNPPSHGSSESSLSSTSYSSP 784
Query: 367 PHPHS 381
HP S
Sbjct: 785 AHPVS 789
>BC014477-1|AAH14477.1| 328|Homo sapiens homeobox D1 protein.
Length = 328
Score = 29.5 bits (63), Expect = 9.3
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 52 AAPQSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQ 231
AAP P+ P P Q + +G +YE G +AA GA PA G
Sbjct: 67 AAPARPSVPPPAAPQYAQCTLEG----AYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLG 122
Query: 232 YPSEDGGT 255
++DGG+
Sbjct: 123 RAADDGGS 130
>AK223347-1|BAD97067.1| 717|Homo sapiens radial spokehead-like 1
variant protein.
Length = 717
Score = 29.5 bits (63), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 261 LSYIANENGFQPQGSHLPTPPPIPEVIQRALAYL 362
L ++ +E GF + +P P P+ +Q A AYL
Sbjct: 173 LQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYL 206
>AK025478-1|BAB15144.1| 603|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21825 fis, clone HEP01348. ).
Length = 603
Score = 29.5 bits (63), Expect = 9.3
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Frame = +1
Query: 22 ILFGLVTVAVAAPQSPTEPIPILKQESS-IEPDGSYQYSYETGNG--ISAAERGALKNIG 192
+L V VA SPT I +++S + +G S G + + R + + +
Sbjct: 345 VLRSSVRVAQKGEPSPTWESNITEKDSDPADGEGPETLSSALSKGAAVYSPSRYSYQLLQ 404
Query: 193 AEEPALQVEGQFQYPSED--GGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSP 366
+ P + + Q S G + P RT ++LR P H S S+ S++SP
Sbjct: 405 CDSPRTESQSLLQQSSSPFRGHPTQSPGYSYRT-TALRPGNPPSHGSSESSLSSTSYSSP 463
Query: 367 PHPHS 381
HP S
Sbjct: 464 AHPVS 468
>AK024384-1|BAB14903.1| 924|Homo sapiens protein ( Homo sapiens cDNA
FLJ14322 fis, clone PLACE4000063, weakly similar to
GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
Length = 924
Score = 29.5 bits (63), Expect = 9.3
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Frame = +1
Query: 22 ILFGLVTVAVAAPQSPTEPIPILKQESS-IEPDGSYQYSYETGNG--ISAAERGALKNIG 192
+L V VA SPT I +++S + +G S G + + R + + +
Sbjct: 666 VLRSSVRVAQKGEPSPTWESNITEKDSDPADGEGPETLSSALSKGATVYSPSRYSYQLLQ 725
Query: 193 AEEPALQVEGQFQYPSED--GGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSP 366
+ P + + Q S G + P RT ++LR P H S S+ S++SP
Sbjct: 726 CDSPRTESQSLLQQSSSPFRGHPTQSPGYSYRT-TALRPGNPPSHGSSESSLSSTSYSSP 784
Query: 367 PHPHS 381
HP S
Sbjct: 785 AHPVS 789
>AK001569-1|BAA91762.1| 924|Homo sapiens protein ( Homo sapiens cDNA
FLJ10707 fis, clone NT2RP3000859. ).
Length = 924
Score = 29.5 bits (63), Expect = 9.3
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Frame = +1
Query: 22 ILFGLVTVAVAAPQSPTEPIPILKQESS-IEPDGSYQYSYETGNG--ISAAERGALKNIG 192
+L V VA SPT I +++S + +G S G + + R + + +
Sbjct: 666 VLRSSVRVAQKGEPSPTWESNITEKDSDPADGEGPETLSSALSKGATVYSPSRYSYQLLQ 725
Query: 193 AEEPALQVEGQFQYPSED--GGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSP 366
+ P + + Q S G + P RT ++LR P H S S+ S++SP
Sbjct: 726 CDSPRTESQSLLQQSSSPFRGHPTQSPGYSYRT-TALRPGNPPSHGSSESSLSSTSYSSP 784
Query: 367 PHPHS 381
HP S
Sbjct: 785 AHPVS 789
>AF241528-1|AAG44444.1| 328|Homo sapiens homeobox-containing
transcripton factor HOXD1 protein.
Length = 328
Score = 29.5 bits (63), Expect = 9.3
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 52 AAPQSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQ 231
AAP P+ P P Q + +G +YE G +AA GA PA G
Sbjct: 67 AAPARPSVPPPAAPQYAQCTLEG----AYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLG 122
Query: 232 YPSEDGGT 255
++DGG+
Sbjct: 123 RAADDGGS 130
>AF202118-1|AAG29939.1| 328|Homo sapiens HOX D1 protein protein.
Length = 328
Score = 29.5 bits (63), Expect = 9.3
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 52 AAPQSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQ 231
AAP P+ P P Q + +G +YE G +AA GA PA G
Sbjct: 67 AAPARPSVPPPAAPQYAQCTLEG----AYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLG 122
Query: 232 YPSEDGGT 255
++DGG+
Sbjct: 123 RAADDGGS 130
>AB051544-1|BAB21848.1| 1409|Homo sapiens KIAA1757 protein protein.
Length = 1409
Score = 29.5 bits (63), Expect = 9.3
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Frame = +1
Query: 22 ILFGLVTVAVAAPQSPTEPIPILKQESS-IEPDGSYQYSYETGNG--ISAAERGALKNIG 192
+L V VA SPT I +++S + +G S G + + R + + +
Sbjct: 1151 VLRSSVRVAQKGEPSPTWESNITEKDSDPADGEGPETLSSALSKGATVYSPSRYSYQLLQ 1210
Query: 193 AEEPALQVEGQFQYPSED--GGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSP 366
+ P + + Q S G + P RT ++LR P H S S+ S++SP
Sbjct: 1211 CDSPRTESQSLLQQSSSPFRGHPTQSPGYSYRT-TALRPGNPPSHGSSESSLSSTSYSSP 1269
Query: 367 PHPHS 381
HP S
Sbjct: 1270 AHPVS 1274
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,085,885
Number of Sequences: 237096
Number of extensions: 2116389
Number of successful extensions: 8166
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8144
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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