Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0552.Seq
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    62   4e-12
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   0.97 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.0  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 62.1 bits (144), Expect = 4e-12
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 255 IQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPENNRP 398
           + ++Y+A+ENGFQ QGSH+PT PPIP  IQRAL + A  P + +  +P
Sbjct: 85  VSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDDGGQP 132



 Score = 44.8 bits (101), Expect = 6e-07
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 40  TVAVAAPQSPT----EPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA 207
           T  +AAPQ P+    +   I  Q+  +  DG+Y  ++ET NGIS  E G  K +  E P 
Sbjct: 10  TATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPV 69

Query: 208 LQVEGQFQYPSEDG 249
           +  +G   Y + DG
Sbjct: 70  VS-QGSDSYTAPDG 82


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 397 HNYSVNLLKKTVNSVNLVEFEMPIYFLTYLSNF 495
           +NY+ N  K   N +N+ +  +P+    Y  NF
Sbjct: 345 NNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNF 377


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 34  LVTVAVAAPQ--SPTEPIPILKQESSIEPDGSYQYS 135
           +VTVA++  +     E +P     +S+EPD    YS
Sbjct: 66  VVTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYS 101


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 373 PHSLKTTGHNYSVNLLKKTVNSVNLVEF 456
           PH + TTG    V+L  + ++S N + +
Sbjct: 176 PHDVATTGKGELVSLTVQAMDSTNTMVY 203


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 300 PEAGSRSHWRCRTTGCTTVLAWV 232
           PEAG  +  +  TTG   +++W+
Sbjct: 41  PEAGIGAVLKVLTTGLPALISWI 63


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 273 ANENGFQPQGSHLPTPPPIPEVIQ 344
           AN N +QP    +P PP    V Q
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQNVPQ 775


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 215 LKVNSSTQARTVVHPVV 265
           + +NS+T  R VV P+V
Sbjct: 174 IAINSTTGKRNVVTPIV 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,959
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)