Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0552.Seq
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1) domain... 32 0.33
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 30 1.0
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 30 1.0
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 29 2.3
At3g14240.1 68416.m01803 subtilase family protein contains simil... 29 2.3
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 3.1
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 29 3.1
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 29 3.1
At5g01340.1 68418.m00047 mitochondrial substrate carrier family ... 28 5.4
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 28 5.4
At2g02970.1 68415.m00249 nucleoside phosphatase family protein /... 28 5.4
At3g10550.1 68416.m01266 expressed protein 27 7.1
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 7.1
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 27 7.1
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At2g35050.1 68415.m04300 protein kinase family protein contains ... 27 9.4
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 9.4
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 9.4
At1g61080.1 68414.m06877 proline-rich family protein 27 9.4
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 9.4
>At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 288
Score = 31.9 bits (69), Expect = 0.33
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Frame = +1
Query: 67 PTEPIPILKQESSIEPDGSYQYSYETGNGISAAERG--ALKNIGAEEPALQVEGQFQYPS 240
P P+ + Q IEP Q E NGI + AL+ P+ V S
Sbjct: 106 PANPVVLESQLGPIEPQTIEQRYIEAINGILRTSKSATALRAPIKTRPSFTVSTCSSPKS 165
Query: 241 E--DGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPH 378
E DG + P + + L +YP H + SS +SH PH H
Sbjct: 166 ESPDGYSHEPPETSFQNNYQL-SRLYPMHR--VHSSPNISHQLQPHSH 210
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 235 PSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVN 414
PS +S+C + P + S H P P + S SHT PH S T H N
Sbjct: 49 PSHTPPSSNCGSPPYDPSPSTPSH--PSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCN 106
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 235 PSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVN 414
PS +S+C + P + S H P P + S SHT PH S T H N
Sbjct: 49 PSHTPPSSNCGSPPYDPSPSTPSH--PSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCN 106
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 291 QPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 386
+P P+PPP P VIQ L PPQ E
Sbjct: 340 EPSRVQSPSPPPPPPVIQPELPQPQPPPPQLE 371
>At3g14240.1 68416.m01803 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 775
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 235 PSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPH-PHSLKTTGHNYSV 411
PS +S+ T + + I+P H + SS A +SPP H+ T H +S
Sbjct: 16 PSSSASSSNSLTYIVHVDHEAKPSIFPTHFHWYTSSLASLTSSPPSIIHTYDTVFHGFSA 75
Query: 412 NLLKKTVNSV 441
L + + +
Sbjct: 76 RLTSQDASQL 85
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 244 DGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKT-TGHNYSVNLL 420
DG T CP S + PH L S+ L H S H +++T T N S
Sbjct: 572 DGATDVCPVSEKLAVTDDTSSDLPHSTHVLSSTVPLGH-SETHKSAVETNTRRNTSTKGK 630
Query: 421 KK 426
KK
Sbjct: 631 KK 632
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 291 QPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 386
Q Q H P PPPI + Q APPQPE
Sbjct: 225 QQQQQHKPPPPPIQQ--QERENSSTDAPPQPE 254
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 256 SSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVNL 417
S T R SS ++H P+ L SS A SP HPHSL H+ +V+L
Sbjct: 30 SESETPESRYWSSFKNHSTPN----LVSSVAALAFSPVHPHSL-AVAHSATVSL 78
>At5g01340.1 68418.m00047 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 309
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = -3
Query: 414 INGIIMACCFQAVGV-RWRGMRERAG*LQELGVVWVNVIPEAGSRSHWRCRTTGCTTVLA 238
+ G++ ACC Q + V + R +R G + + V+ G R+ W+ T T +
Sbjct: 22 LGGVVEACCLQPIDVIKTRLQLDRVGAYKGIAHCGSKVVRTEGVRALWKGLTPFATHL-- 79
Query: 237 WVLELTFNL*SRFFSADVFESASLG 163
L+ T + S F+ + G
Sbjct: 80 -TLKYTLRMGSNAMFQTAFKDSETG 103
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 301 DHIYPHHPQFLKSSSALSHTSPPHPHSL----KTTGHNYSVNLL 420
DH + HH Q + A + + P HP S T+ H+ S+N+L
Sbjct: 360 DHHHHHHQQQQQRHHAFNISQPTHPISTIISPSTSLHHASINIL 403
>At2g02970.1 68415.m00249 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P55772
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Mus musculus}; contains Pfam
profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 555
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 RLKVNSSTQARTVVHPVVLH-RQ*ERLPASGITFTHTTPNS 331
R +V +S+ +++ + P+ R R P+S T+T T PNS
Sbjct: 7 RSRVKNSSSSKSDMDPIKFQIRSGNRAPSSSSTYTLTKPNS 47
>At3g10550.1 68416.m01266 expressed protein
Length = 634
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 202 PALQVEGQFQYPSEDGGTSSCPTSPMRTAS 291
P + G F +P + S P+SP+R +S
Sbjct: 287 PNISGSGNFDFPRQSSSAGSFPSSPVRQSS 316
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 122 DPSGSMLLSCFSIGMGSVGDWGA-----ATATVTSPKRITKVFMF 3
+PS LLSCF+ VGDW +AT+ K ++K+ ++
Sbjct: 317 NPSNLTLLSCFTHANWQVGDWCLLPSLNQSATIPLHKHVSKLRLY 361
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +1
Query: 214 VEGQFQYPSEDGGTSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTT 393
VE PS + P+SP S + P SS +SH+SPP S
Sbjct: 136 VESPTTSPSSAKSPAITPSSP--AVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAV 193
Query: 394 GHNYSVNLLKKTVNSVN 444
H+ V V +V+
Sbjct: 194 SHSSPVVAASSPVKAVS 210
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 294 PQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 392
P S LP PPP+P IQ A P P N
Sbjct: 29 PPSSSLP-PPPLPTEIQANPIVFAAVTPYPNPN 60
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 294 PQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 392
P S LP PPP+P IQ A P P N
Sbjct: 29 PPSSSLP-PPPLPTEIQANPIVFAAVTPYPNPN 60
>At2g35050.1 68415.m04300 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 67 PTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVE 219
P E PI+ Q SS PD S E + +E N+ A+EP ++ E
Sbjct: 525 PKEEAPIVTQTSSSTPDPSSSTLSE--KSLRKSEDHVENNLSAKEPKMRKE 573
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Frame = +1
Query: 124 YQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQ-YPSEDGGTSSCPTSPMRTASSLR 300
Y+Y T G + G E A + +Q P SS + SSL
Sbjct: 98 YKYHKRTKEGRTGKSEGKTYRFFEELEAFETLSSYQPEPESQPAKSSAVITNAPATSSLI 157
Query: 301 DHIYPHHPQFLKSSSALSH 357
I +P KSSS L H
Sbjct: 158 PWISSSNPSTEKSSSPLKH 176
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Frame = +1
Query: 124 YQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQ-YPSEDGGTSSCPTSPMRTASSLR 300
Y+Y T G + G E A + +Q P SS + SSL
Sbjct: 21 YKYHKRTKEGRTGKSEGKTYRFFEELEAFETLSSYQPEPESQPAKSSAVITNAPATSSLI 80
Query: 301 DHIYPHHPQFLKSSSALSH 357
I +P KSSS L H
Sbjct: 81 PWISSSNPSTEKSSSPLKH 99
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 309 LPTPPPIPEVIQRALAYLATAPPQP 383
LP+PPP P + A++ PP P
Sbjct: 437 LPSPPPTPPIADIAISMPPPPPPPP 461
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 294 PQGSHLPTPPPIPEVIQRALAYLATAPP 377
P + LP PPP+P +++ +A PP
Sbjct: 227 PGRAALPPPPPLPMAVRKGVAAPPLPPP 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,992
Number of Sequences: 28952
Number of extensions: 291311
Number of successful extensions: 1173
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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