Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0551.Seq
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.99 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.0  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   7.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 104 LRFSCAFHFFNFHV 63
           L F CAF FFN H+
Sbjct: 180 LLFCCAFIFFNMHL 193


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 548 KRPRVPNNLNLIQLYMNRYKRKRLKLGMSFTLK 646
           K+P +   LN   LYM   K  R K+    TLK
Sbjct: 475 KKPHIKKPLNAFMLYM---KEMRAKVVAECTLK 504


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 548 KRPRVPNNLNLIQLYMNRYKRKRLKLGMSFTLK 646
           K+P +   LN   LYM   K  R K+    TLK
Sbjct: 367 KKPHIKKPLNAFMLYM---KEMRAKVVAECTLK 396


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 548 KRPRVPNNLNLIQLYMNRYKRKRLKLG-MSFTLKLI 652
           K  ++PNN+NL+ +    +   ++++G +S  LK I
Sbjct: 54  KLSKIPNNVNLMDVVAREF--DKIQVGDVSSVLKFI 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,377
Number of Sequences: 336
Number of extensions: 3449
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)