Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0551.Seq
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 138 5e-34
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 77 2e-15
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.4
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 26 4.3
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 26 4.3
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 7.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 10.0
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 138 bits (335), Expect = 5e-34
Identities = 65/79 (82%), Positives = 70/79 (88%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTA+ALAIAQELG KVPFCPMVGSEVYS+EIKKTE LMENFRRAIGLR++ETKEVYEG
Sbjct: 75 TGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAIGLRVKETKEVYEG 134
Query: 464 EVTELTPVETENPAGAMEK 520
EVTE+ P E ENP G K
Sbjct: 135 EVTEMVPEEAENPLGGYGK 153
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = +1
Query: 511 YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
YGKT+SHV++GLKT KGTKQLKLDP+IYESLQ+E+V GDVIYIEAN+GAVKR G
Sbjct: 151 YGKTISHVLLGLKTHKGTKQLKLDPSIYESLQREQVSTGDVIYIEANTGAVKRVG 205
Score = 75.4 bits (177), Expect = 7e-15
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +3
Query: 66 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 245
++I EVK + RI+ HSHIKGLGL E+G + G +GQE AREA GI+ D+I+SKK
Sbjct: 2 VQISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKK 61
Query: 246 MAGE 257
G+
Sbjct: 62 FGGK 65
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTAIA+ +AQ LG+ PF + SEVYS E+ KTE L++ R++IG+RI+E E+ EG
Sbjct: 76 TGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALRKSIGVRIKEETEIIEG 135
Query: 464 EVTEL 478
EV E+
Sbjct: 136 EVVEV 140
Score = 63.3 bits (147), Expect = 3e-11
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +3
Query: 63 NMKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSK 242
++ + +K +RI AHSHIKG+GL++N P + + G+VGQ AR AAG+++ MI+
Sbjct: 2 SISVTSHNDVSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEG 61
Query: 243 KMAG 254
++AG
Sbjct: 62 RIAG 65
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 577 LDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
L + +SL KEKV GDVI I+ + G V + G
Sbjct: 168 LGTKMIDSLTKEKVLAGDVISIDKSVGRVTKLG 200
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 108 ISAHS-HIKGLGLDENGVPIQMAAGLVG 188
+S H+ IK LD+ G+PI++ +GL+G
Sbjct: 35 VSLHNLRIKPEALDKLGIPIEITSGLIG 62
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSE 364
+GKTA+A IA LG++ PF +V +E
Sbjct: 596 SGKTALAATIA--LGSEFPFVKLVSAE 620
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 490 NRKSCWSYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGD 630
N C+ + S +IIG ++ T + LDP Y+S+QK+ V + D
Sbjct: 154 NVSPCYLQFQGHSIIIIGFCSSLETLVV-LDPDRYQSVQKKFVNIAD 199
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 544 LKTAKGTKQLKLDPTIYESLQKEK 615
+KT G KQL P+I++ + E+
Sbjct: 1 MKTVSGVKQLSFTPSIFKKITPEQ 24
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 10.0
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -1
Query: 442 FTYTQAYSTSKILH*YLCFLDLCAVNFTTNHWTERNLSSKFLSDGKSYSSFASTRRPCQE 263
FT++ +ST +H + + +FTT+H L+S F + +SS + +
Sbjct: 3710 FTHS-TFSTGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTK 3768
Query: 262 *SSPAIFLLLIISTTIPAASRADS 191
SS IS T+ ++S D+
Sbjct: 3769 SSSLGKIGSSSISLTLSSSSIRDA 3792
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,053
Number of Sequences: 5004
Number of extensions: 56330
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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