Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0551.Seq
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 132 2e-31
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 130 1e-30
06_01_0608 - 4399252-4399894,4401640-4402427 78 6e-15
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 56 3e-08
06_01_0876 - 6712224-6712812,6713777-6715233 28 5.9
06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423... 28 7.8
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 28 7.8
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 132 bits (320), Expect = 2e-31
Identities = 62/79 (78%), Positives = 70/79 (88%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTA+AL I+QELG+KVPFCPMVGSEVYS+E+KKTEVLMENFRRAIGLRI+E KEVYEG
Sbjct: 14 TGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEG 73
Query: 464 EVTELTPVETENPAGAMEK 520
EVTEL+P E E+ G K
Sbjct: 74 EVTELSPEEAESTTGGYGK 92
Score = 100 bits (239), Expect = 1e-21
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 511 YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
YGK++SHVIIGLKT KGTKQLKLDPTIY++L KEKV VGDVIYIEANSGAVKR G
Sbjct: 90 YGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVSVGDVIYIEANSGAVKRVG 144
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 130 bits (314), Expect = 1e-30
Identities = 61/79 (77%), Positives = 69/79 (87%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTA+AL I+QELG+KVPFCPMVGSEVYS+E+KKTEVLMENFRRAIGLRI+E KEVYEG
Sbjct: 74 TGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEG 133
Query: 464 EVTELTPVETENPAGAMEK 520
EVTEL+P E E+ K
Sbjct: 134 EVTELSPEEAESTTSGYGK 152
Score = 99 bits (238), Expect = 2e-21
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 511 YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
YGK++SHVIIGLKT KGTKQLKLDPTIY++L KEKV VGDVIYIEANSGAVKR G
Sbjct: 150 YGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVG 204
Score = 95.9 bits (228), Expect = 3e-20
Identities = 45/63 (71%), Positives = 53/63 (84%)
Frame = +3
Query: 66 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 245
M+IEEV+S AK QRI+ H+HIKGLGLD NG I +A+G VGQ +AREAAG+VVDMIR KK
Sbjct: 1 MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
Query: 246 MAG 254
MAG
Sbjct: 61 MAG 63
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTA+A+ IA+ LG + PF + SE++S ++ KTE L + FRR+IG+RI+E E+ EG
Sbjct: 78 TGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAFRRSIGVRIKEEAEIIEG 137
Query: 464 EVTELT---PVETENPAGA 511
EV E++ PV AG+
Sbjct: 138 EVVEISIDRPVSAAAAAGS 156
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +3
Query: 69 KIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKM 248
++ E + + +RI AHSHI+GLGLD + + G+VGQ AR AAG+++ +IR K+
Sbjct: 6 RLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLIRQGKI 65
Query: 249 AG 254
AG
Sbjct: 66 AG 67
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 544 LKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
LKT +L + E+L KEKV+ GDV+ ++ SG V + G
Sbjct: 173 LKTTDMETVYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLG 216
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 305 LAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGLRIRETKEVYEGEVTELT 481
+ IA+ LG + PF + SE++S ++ KTE L + F R+IG+RI+ E+ EGEV E++
Sbjct: 1 MGIAESLGAETPFASVAASELFSLDLSKTEEALTQAFHRSIGVRIKAEAEIIEGEVVEIS 60
>06_01_0876 - 6712224-6712812,6713777-6715233
Length = 681
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSE 364
TGKT +A AIA E G VPF + GSE
Sbjct: 260 TGKTLLAKAIAGEAG--VPFFSLSGSE 284
>06_03_1068 -
27341103-27341444,27341689-27341929,27342030-27342343,
27342672-27343805
Length = 676
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSE 364
TGKT +A AIA E G VPF + GSE
Sbjct: 258 TGKTLLAKAIAGEAG--VPFFSISGSE 282
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 153 GVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYSWQ 272
G ++ +G+ES R A G +V + ++MAG Y Q
Sbjct: 96 GEELEEKRSRMGEESGRRATGDLVAAVARRRMAGRSYGDQ 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,540
Number of Sequences: 37544
Number of extensions: 345222
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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