Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0551.Seq
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_6155| Best HMM Match : SRP19 (HMM E-Value=0.95) 29 2.6
SB_50008| Best HMM Match : SRP19 (HMM E-Value=4.6) 29 3.4
SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1) 29 3.4
SB_56551| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=0.0049) 28 6.0
SB_45161| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_52124| Best HMM Match : SRP19 (HMM E-Value=1.1) 28 7.9
SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29) 28 7.9
SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_8367| Best HMM Match : SRP19 (HMM E-Value=1.1) 28 7.9
>SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTAIA+ +AQ LG PF + GSE++S E+ KTE L + + L + ET E+ EG
Sbjct: 180 TGKTAIAMGMAQSLGPDTPFTSIAGSEIFSLEMSKTEALTQ---PSESLLVEET-EIIEG 235
Query: 464 EVTEL 478
EV E+
Sbjct: 236 EVVEV 240
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +3
Query: 114 AHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAG 254
AHSHI+GLGLD+ Q++ G+VGQ +AR AAGI+++MI+ K+AG
Sbjct: 123 AHSHIRGLGLDDALEARQVSQGMVGQVTARRAAGIILEMIKEGKIAG 169
>SB_6155| Best HMM Match : SRP19 (HMM E-Value=0.95)
Length = 568
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 150 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYS 266
N VP + L AREA G+ + + +K+A ELYS
Sbjct: 4 NSVPCEPREDLYNLLDAREATGLRISVPAYRKVADELYS 42
>SB_50008| Best HMM Match : SRP19 (HMM E-Value=4.6)
Length = 338
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 150 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYS 266
N VP + L + AREA G+ + + +K+ ELYS
Sbjct: 113 NSVPCEPREDLYNRLDAREATGLRISVPAYRKVVDELYS 151
>SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)
Length = 607
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 150 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYS 266
N VP + L + AREA G+ + + +K+ ELYS
Sbjct: 4 NSVPCEPREDLYNRLDAREATGLRISVPAYRKVVDELYS 42
>SB_56551| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=0.0049)
Length = 113
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 140 PQAFYMTVSRDPLRFSCAFHFFNFHVESSFTLLN 39
P YM R P R F+FF F + + T LN
Sbjct: 4 PSKAYMQTRRFPKRHISIFNFFTFSCKQAVTFLN 37
>SB_45161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 150 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYS 266
N VP + L AREA G+ + + +K+ ELYS
Sbjct: 20 NSVPCEPREDLYNLLDAREATGLRISVPAYRKVVDELYS 58
>SB_52124| Best HMM Match : SRP19 (HMM E-Value=1.1)
Length = 621
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 150 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYS 266
N VP + L AREA G+ + + +K+ ELYS
Sbjct: 4 NSVPCEPREDLYNLLDAREATGLRISVPAYRKVVDELYS 42
>SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)
Length = 576
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 251 GHFLTSYHIYNYPCSLTCRLLTHETGCHLNRNTIFIQ 141
G F S H+ + PC L+ + T+E L+ +TIF++
Sbjct: 401 GGFCRSPHVQSMPCFLSGDMRTNENPGLLSMHTIFLR 437
>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 139 GWMKMVFLFKWQPVSWV 189
G++K FLF+++P SWV
Sbjct: 9 GYIKAYFLFEYEPTSWV 25
>SB_8367| Best HMM Match : SRP19 (HMM E-Value=1.1)
Length = 354
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 150 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGELYS 266
N VP + L AREA G+ + + +K+ ELYS
Sbjct: 70 NSVPCEPREDLYNLLDAREATGLRISVPAYRKVVDELYS 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,138
Number of Sequences: 59808
Number of extensions: 396783
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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