Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0551.Seq
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...   116   1e-26
AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb (recombi...    82   4e-16
AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical...    28   7.0  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    27   9.2  

>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score =  116 bits (280), Expect = 1e-26
 Identities = 54/75 (72%), Positives = 66/75 (88%)
 Frame = +2

Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
           TGKTAIALA++QELG  VPF P+V SEV+S E+KKTEVLM +FRRAIGLR++ETK+VYEG
Sbjct: 93  TGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFRRAIGLRVKETKDVYEG 152

Query: 464 EVTELTPVETENPAG 508
           EVTEL+PVE  + +G
Sbjct: 153 EVTELSPVEASDNSG 167



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 40/54 (74%), Positives = 50/54 (92%)
 Frame = +1

Query: 514 GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
           GKT+SH+++ LKTAKG+KQLKLDP+IY+S+ K++VEVGDVIYIEANSG VKR G
Sbjct: 169 GKTISHLVLSLKTAKGSKQLKLDPSIYDSILKQRVEVGDVIYIEANSGIVKRVG 222



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 40/63 (63%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
 Frame = +3

Query: 72  IEEVKSTAKT-QRISAHSHIKGLGLD-ENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 245
           IEEVK T K  +RI+AHSH+KGLG+D E       AAG VGQ  AR AA IVVDMIR K 
Sbjct: 20  IEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIRLKC 79

Query: 246 MAG 254
           MAG
Sbjct: 80  MAG 82


>AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb
           (recombination protein) homologprotein 2 protein.
          Length = 448

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 40/74 (54%), Positives = 51/74 (68%)
 Frame = +2

Query: 287 GKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGE 466
           GKTAIA+AI++ELG   PF  +V SE+YS EI KTE L + FRRA+G++I+E  EV EGE
Sbjct: 78  GKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQIKEETEVLEGE 137

Query: 467 VTELTPVETENPAG 508
           V  L    + N  G
Sbjct: 138 VISLEVDRSANGMG 151



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 28/58 (48%), Positives = 40/58 (68%)
 Frame = +3

Query: 81  VKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAG 254
           VK   K +R S HSHI GLGL++      ++ G+VGQ +AR+AAG++V MI+  K+AG
Sbjct: 9   VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAG 66



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 577 LDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
           L   + ++  KEKV  GDVI ++  SG V R G
Sbjct: 170 LGSKMVDACLKEKVMPGDVIQVDKASGRVTRLG 202


>AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical
           protein R07C3.3 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 27/95 (28%), Positives = 39/95 (41%)
 Frame = -3

Query: 296 QFCQYQEALPRVKLPGHFLTSYHIYNYPCSLTCRLLTHETGCHLNRNTIFIQPQAFYMTV 117
           QF    +  P +K+PGHF T+  I+N    +T   L      +L+R            TV
Sbjct: 326 QFISTFQMSPDLKMPGHF-TNECIHNDTAIVTISRLARWVPIYLDR-----AAHCATGTV 379

Query: 116 SRDPLRFSCAFHFFNFHVESSFTLLNSRRYFVFSV 12
             D     C F   +F   S F +LN    F +S+
Sbjct: 380 RHD----ICIFGIEDFRAISKFPILNMLPAFDYSI 410


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 426 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 325
           P+ ++  S+    FL+S++    P+IGQ+  L+P
Sbjct: 96  PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 129


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 426 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 325
           P+ ++  S+    FL+S++    P+IGQ+  L+P
Sbjct: 229 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 262


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 426 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 325
           P+ ++  S+    FL+S++    P+IGQ+  L+P
Sbjct: 229 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,150
Number of Sequences: 27780
Number of extensions: 314229
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)