Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0551.Seq
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 136 2e-32
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 82 4e-16
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 77 8e-15
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,... 31 0.93
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 30 1.6
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 29 2.8
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 28 5.0
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi... 28 5.0
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 28 6.6
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 28 6.6
At5g63590.1 68418.m07983 flavonol synthase, putative similar to ... 27 8.7
At5g42470.1 68418.m05170 expressed protein low similarity to BRE... 27 8.7
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 27 8.7
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 136 bits (328), Expect = 2e-32
Identities = 64/79 (81%), Positives = 72/79 (91%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTA+AL I+QELG+KVPFCPMVGSEVYS+E+KKTEVLMENFRRAIGLRI+ETKEVYEG
Sbjct: 77 TGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKETKEVYEG 136
Query: 464 EVTELTPVETENPAGAMEK 520
EVTEL+P ETE+ G K
Sbjct: 137 EVTELSPEETESLTGGYGK 155
Score = 97.9 bits (233), Expect = 5e-21
Identities = 44/64 (68%), Positives = 56/64 (87%)
Frame = +3
Query: 66 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 245
+KIEE++STAK QRI+ H+HIKGLGL+ G+PI++AAG VGQ AREAAG+VVDMI+ KK
Sbjct: 4 VKIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKK 63
Query: 246 MAGE 257
MAG+
Sbjct: 64 MAGK 67
Score = 94.3 bits (224), Expect = 7e-20
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +1
Query: 511 YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
YGK++SHV+I LKT KGTK LKLDPTIY++L KEKV VGDVIYIEANSGAVKR G
Sbjct: 153 YGKSISHVVITLKTVKGTKHLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVG 207
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 81.8 bits (193), Expect = 4e-16
Identities = 39/76 (51%), Positives = 55/76 (72%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGKTAIA+ +A+ LG + PF + GSE++S E+ KTE L ++FR+AIG+RI+E EV EG
Sbjct: 77 TGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRKAIGVRIKEETEVIEG 136
Query: 464 EVTELTPVETENPAGA 511
EV E V+ + PA +
Sbjct: 137 EVVE---VQIDRPASS 149
Score = 67.7 bits (158), Expect = 7e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +3
Query: 66 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 245
+K+ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+++ MIR K
Sbjct: 4 LKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGK 63
Query: 246 MAG 254
+AG
Sbjct: 64 IAG 66
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 544 LKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
+KT + + E+L KEKV+ GDVI I+ +G + + G
Sbjct: 160 MKTTDMETVYDMGAKMIEALNKEKVQSGDVIAIDKATGKITKLG 203
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 77.4 bits (182), Expect = 8e-15
Identities = 36/79 (45%), Positives = 54/79 (68%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEG 463
TGK AIA+ IA+ LG + PF + GSE++S E+ KTE L + FR+AIG+RI+E +V EG
Sbjct: 77 TGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKAIGVRIKEETDVIEG 136
Query: 464 EVTELTPVETENPAGAMEK 520
EV ++ + G+++K
Sbjct: 137 EVVTISIDRPASSGGSVKK 155
Score = 63.3 bits (147), Expect = 1e-10
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +3
Query: 66 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 245
+++ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+ +++IR K
Sbjct: 4 LRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGK 63
Query: 246 MAG 254
++G
Sbjct: 64 ISG 66
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 538 IGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQG 675
I +KT L + E L KEKV+ GDVI ++ G + + G
Sbjct: 159 ITMKTTDMESNFDLGWKLIEPLDKEKVQSGDVIVLDRFCGKITKLG 204
>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 788
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/34 (32%), Positives = 25/34 (73%)
Frame = +1
Query: 550 TAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEAN 651
T G+K LDP+ E++++E++++GD + ++A+
Sbjct: 639 TPAGSKTWMLDPSEVETIEEEELKIGDWVRVKAS 672
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 519 FSIAPAGFSVSTGVNSVTSPSYTSLVSRIR 430
+S +PA S +T V ++T+ S TSL SR+R
Sbjct: 56 YSSSPADHSPATAVEAITNRSKTSLKSRLR 85
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 489 STGVNSVTSPSYTSLVSRIRRPIARRKFSINTSVFLISVL*TSLP 355
S+ NSV+SP T S R P +RR +TS F +S+ +S P
Sbjct: 626 SSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYP 670
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSE 364
TGKT +A AIA E G VPF + GSE
Sbjct: 267 TGKTLLAKAIAGEAG--VPFFSLSGSE 291
>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
protein
Length = 528
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -3
Query: 197 RLLTHETGCHLNR----NTIFIQPQAFYMTVSRDPLRFS 93
+L TH+ GC++ + NT+ +Q + +SRD LR S
Sbjct: 368 QLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLS 406
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSE 364
TGKT +A AIA E G VPF + GSE
Sbjct: 271 TGKTLLAKAIAGEAG--VPFFSISGSE 295
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 284 TGKTAIALAIAQELGTKVPFCPMVGSE 364
TGKT +A AIA E G VPF + GSE
Sbjct: 264 TGKTLLAKAIAGEAG--VPFFSISGSE 288
>At5g63590.1 68418.m07983 flavonol synthase, putative similar to
SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1)
{Arabidopsis thaliana}; contains Pfam profile PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 308
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 359 SEVYSTEIKK-TEVLMENFRRAIGLRIRETKEVYEGEVTE 475
+E Y++ IKK +E +ME +GLR KE GE E
Sbjct: 130 NEEYASHIKKLSEKIMEWLSEGLGLRHEALKEGLGGETIE 169
>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
alpha b isoform [Homo sapiens] GI:16326573
Length = 382
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 141 LDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAG 254
L G+ +QMA+G+ E + A +V+DM +K + G
Sbjct: 149 LTRKGIEMQMASGVDKPEEVKFAVPLVMDMNINKMVVG 186
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 320 ELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPVETE 496
E+ T++PF + E+ TEI + +L NFR+ G+ E GE E+ TE
Sbjct: 82 EIATRLPFSDLEAHEISETEI--STLLTNNFRKQ-GISSSENL----GETAEMDSATTE 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,492
Number of Sequences: 28952
Number of extensions: 288432
Number of successful extensions: 694
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -