Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0550.Seq
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.12 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    26   0.12 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.1  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.6  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   4.6  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   4.6  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   6.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   8.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   8.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   8.0  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 104 SPQRDSPLISPK--INPSDPPIEKP 172
           SP+R SP+++ K  ++P+ PP   P
Sbjct: 79  SPKRSSPILAEKVSVSPTTPPTPSP 103



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 293 PRRPVATPPR 322
           P RPVA PP+
Sbjct: 65  PIRPVALPPK 74


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 290 QPRRPVATPPRCPPV 334
           +P  P   PPRCPP+
Sbjct: 22  RPHSPEPYPPRCPPI 36


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 307 NWPPRLAGCRRVFCLHRKSGDGVLDALRQRRTVAAS 200
           N PP      +   L R SG G    +R+ RT+ +S
Sbjct: 95  NCPPSPKDDEKCLSLERPSGGGKGKKMRKPRTIYSS 130


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 319 WRCGNWPPRLAGCRRVFCLHRKS 251
           W+C    PRL  C  +    R+S
Sbjct: 174 WQCQGGYPRLQRCPAMLVFDRRS 196


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 104 SPQRDSPLISPKINPSDPPIEKPIS 178
           +P    PL+SPK    +  +E  ++
Sbjct: 107 TPPNSEPLVSPKSEKEEKDMETTLT 131


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 277  VDSQPTEEASCHTATMPT 330
            V  QP ++A+C T T  T
Sbjct: 1099 VPEQPPDKATCTTLTAQT 1116


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 321 RGGVATGLLGWLAVDAYFAFTGRVVT 244
           RG +     GW ++   +A+   VVT
Sbjct: 73  RGEIGRITFGWTSIPMLYAYVFYVVT 98


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 321 RGGVATGLLGWLAVDAYFAFTGRVVT 244
           RG +     GW ++   +A+   VVT
Sbjct: 73  RGEIGRITFGWTSIPMLYAYVFYVVT 98


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 321 RGGVATGLLGWLAVDAYFAFTGRVVT 244
           RG +     GW ++   +A+   VVT
Sbjct: 73  RGEIGRITFGWTSIPMLYAYVFYVVT 98


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 265 LHRKSGDGVLDALRQRRTVAASGD 194
           +H   GDG+LD  ++ +   A  D
Sbjct: 197 MHSPPGDGILDFSKRGQKSDADSD 220



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +2

Query: 92  SSSRSPQRDSPLISPKINPSDP 157
           + ++    D P +SP  +P  P
Sbjct: 901 NGAKEEDEDKPSVSPLTSPRQP 922


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  FINAKPQNHQRDQ 51
           FIN  P+NH + +
Sbjct: 308 FINIDPENHNKTE 320


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 223 GGERPERRHHSSGEGKIRVDSQPT 294
           GG+ PE    ++G+G  R ++  T
Sbjct: 38  GGKPPELTGSTNGDGGARSNADST 61


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 10  GFINAKPQNHQRDQRQMRHVAQHLN*GIQQPF 105
           G +  K Q +    + +RHV +       QPF
Sbjct: 349 GMLKRKRQKYHDPSQLLRHVEESDKQRTHQPF 380


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 223 GGERPERRHHSSGEGKIRVDSQPT 294
           GG+ PE    ++G+G  R ++  T
Sbjct: 194 GGKPPELTGSTNGDGGARSNADST 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,086
Number of Sequences: 336
Number of extensions: 2003
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)