Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0550.Seq
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.078
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 32 0.14
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 31 0.18
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.24
SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8) 29 0.96
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 29 1.3
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 29 1.3
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043) 28 2.2
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 27 2.9
SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8) 27 2.9
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 27 2.9
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 27 3.9
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_2042| Best HMM Match : Amidase (HMM E-Value=0) 27 3.9
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 27 3.9
SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 27 3.9
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 27 5.1
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5) 27 5.1
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 27 5.1
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 27 5.1
SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43) 27 5.1
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 26 6.8
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 26 6.8
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 26 6.8
SB_41900| Best HMM Match : TIR (HMM E-Value=7.5) 26 6.8
SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 26 6.8
SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_4730| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 26 9.0
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 26 9.0
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 26 9.0
SB_19181| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 26 9.0
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 32.7 bits (71), Expect = 0.078
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Frame = +2
Query: 5 FADSSMPNHKITSGISARCGTLRNI*IEVSSSRSPQRDSPLISPKINP---SDPPIEKPI 175
F++ + H+++S L + + ++ SPL+S +++P S P
Sbjct: 508 FSEDNFEEHRMSSPQVRESTCLSQPQVPSTQQQNAITGSPLLSQRVSPHQFSVSPSHGTK 567
Query: 176 SARQELI---ARCCHS-SPLAESVQNAVTTL--PVKAKYASTASQPRRPVATPPRCPP 331
+A + A HS SPLA S + T+ P+K+ + P+ PV+ P RC P
Sbjct: 568 AASPPMTSYSATGVHSKSPLASSHYDLEGTVLQPMKSPSQVLQTPPKSPVSVPQRCSP 625
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 128 ISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTAS 289
ISP P+ P+E+ +R A C + SP++ + + T V ++ AS
Sbjct: 318 ISPVTTPT-APVEREEGSRSPDHALCSNRSPVSSPLAHTTPTSTVPREHLKNAS 370
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 31.9 bits (69), Expect = 0.14
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 92 SSSRSPQRDSPLI--SPKINPSD-PPIEKPISARQELIARCCHSSPLAESVQNAVTTLPV 262
+S+ SP LI +P PS+ PP+ P + ++ H+ P++ + P
Sbjct: 358 ASTPSPTMGKTLIQYNPVSTPSNTPPVSTP--SHTPPVSTPSHTPPVSTPSHTPPVSTPS 415
Query: 263 KAKYASTASQPRRPVATPPRCPPVKT 340
ST S PV+TP PPV T
Sbjct: 416 HTPPVSTPSHTP-PVSTPSNTPPVST 440
Score = 31.9 bits (69), Expect = 0.14
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 98 SRSPQRDSPLISPKIN-PSD-PPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
S +P +P +P ++ PS PP+ P + ++ H+ P++ + P
Sbjct: 379 SNTPPVSTPSHTPPVSTPSHTPPVSTP--SHTPPVSTPSHTPPVSTPSHTPPVSTPSNTP 436
Query: 272 YASTASQPRRPVATPPRCPPVKT 340
ST S PV+TP PPV T
Sbjct: 437 PVSTPSHTP-PVSTPSHTPPVST 458
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 98 SRSPQRDSPLISPKIN-PSD-PPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
S +P +P +P ++ PS PP+ P + ++ H+ P++ + P
Sbjct: 388 SHTPPVSTPSHTPPVSTPSHTPPVSTP--SHTPPVSTPSHTPPVSTPSNTPPVSTPSHTP 445
Query: 272 YASTASQPRRPVATPPRCPPVKT 340
ST S PV+TP PPV T
Sbjct: 446 PVSTPSHTP-PVSTPSHTPPVST 467
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 98 SRSPQRDSPLISPKIN-PSD-PPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
S +P +P +P ++ PS PP+ P + ++ H+ P++ + P
Sbjct: 406 SHTPPVSTPSHTPPVSTPSHTPPVSTPSNTPP--VSTPSHTPPVSTPSHTPPVSTPSHTP 463
Query: 272 YASTASQPRRPVATPPRCPPVKT 340
ST S PV+TP PPV T
Sbjct: 464 PVSTPSHTP-PVSTPSHTPPVST 485
Score = 29.9 bits (64), Expect = 0.55
Identities = 24/101 (23%), Positives = 40/101 (39%)
Frame = +2
Query: 38 TSGISARCGTLRNI*IEVSSSRSPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSS 217
+S S T+ I+ + +P P+ +P PP+ P + ++ H+
Sbjct: 355 SSRASTPSPTMGKTLIQYNPVSTPSNTPPVSTPS---HTPPVSTP--SHTPPVSTPSHTP 409
Query: 218 PLAESVQNAVTTLPVKAKYASTASQPRRPVATPPRCPPVKT 340
P++ + P ST S PV+TP PPV T
Sbjct: 410 PVSTPSHTPPVSTPSHTPPVSTPSNTP-PVSTPSHTPPVST 449
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 98 SRSPQRDSPLISPKIN-PSD-PPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
S +P +P +P ++ PS PP+ P + ++ ++ P++ + P
Sbjct: 397 SHTPPVSTPSHTPPVSTPSHTPPVSTP--SHTPPVSTPSNTPPVSTPSHTPPVSTPSHTP 454
Query: 272 YASTASQPRRPVATPPRCPPVKT 340
ST S PV+TP PPV T
Sbjct: 455 PVSTPSHTP-PVSTPSHTPPVST 476
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +2
Query: 98 SRSPQRDSPLISPKIN-PSD-PPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
S +P +P +P ++ PS PP+ P + ++ H+ P++ P
Sbjct: 442 SHTPPVSTPSHTPPVSTPSHTPPVSTP--SHTPPVSTPSHTPPVSTPSNTPPVFTPSHTP 499
Query: 272 YASTASQPRRPVATPPRCPPVKT 340
T S PV+TP PPV T
Sbjct: 500 PVFTPSHTP-PVSTPSNSPPVST 521
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 31.5 bits (68), Expect = 0.18
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Frame = +2
Query: 14 SSMPN-HKITSGISARCGTLRNI*IEVSSSRSPQRDSPLISPKINPSDPPIEKPISARQE 190
+S P+ H I+ S G N+ I S RSP + SP++ P S P + S
Sbjct: 532 TSFPSQHSISMTSSLGRGPHPNVTISSQSPRSPNQVSPVLPPSPRASHSPADTHGS---- 587
Query: 191 LIARCCH----SSPLAESVQNAVTTLPVKAKYASTASQ-PRR 301
+ CH P E +++ L +KAK S A + P+R
Sbjct: 588 ---QACHEEREKGPNGERQTSSIAALRLKAKEHSVAMEMPKR 626
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 31.1 bits (67), Expect = 0.24
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Frame = +2
Query: 83 IEVSSSRSPQRDSPLISPKINPSDPPIEKPISARQE---LIARCCHSSPLAESVQNAVTT 253
I+V+S P D P P P+DPP + P + L+A S+ E++ T
Sbjct: 18 IDVNSQTDPPTDPPTDPPTDPPTDPPTDPPTDPPTDPPTLLATEAQSALATEAIAPTSTV 77
Query: 254 LPVKAKYASTASQPRRPVATPPRCPPVKT 340
P + +P P T
Sbjct: 78 EPTSTVEPTNTVEPTSTAEPTNTVEPTNT 106
>SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)
Length = 253
Score = 29.1 bits (62), Expect = 0.96
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 330 GGHRGGVATGLLGWLAVDAYFAFTG 256
G HRG ++ L W+ ++ YF+ TG
Sbjct: 97 GSHRGFISVQRLVWITLEVYFSTTG 121
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 28.7 bits (61), Expect = 1.3
Identities = 23/91 (25%), Positives = 32/91 (35%)
Frame = +1
Query: 25 KPQNHQRDQRQMRHVAQHLN*GIQQPFSPAR*PANQSQNQPQRSAN*KANQRPPGADRQM 204
+PQ R Q R H Q+P P P Q Q++PQ RP + R +
Sbjct: 103 RPQEPHRPQEPPRPQEPHRP---QEPHRPLEPPRPQEQHRPQEPHRPLEPTRPQESHRPL 159
Query: 205 LPQFAAGGERPERRHHSSGEGKIRVDSQPTE 297
P RP H + + +P E
Sbjct: 160 EPPRPQEQHRPLESHRPLEPTRPQESHRPLE 190
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = +2
Query: 98 SRSPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYA 277
S +PQ +P SP I PP KP H SP + K
Sbjct: 127 STTPQHPTPQHSPPIRKQTPP-SKP------------HPSPTPAQAPPHSRPVAAKRPMP 173
Query: 278 STASQPRRPVATPPRCPP 331
ST Q P PPR PP
Sbjct: 174 STPDQNPCPSEAPPRLPP 191
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 95 SSRSPQRDSPLISPKINPSDPPIEKPISARQELI 196
S S DSPL+ P P+ PP + +A +L+
Sbjct: 370 SYNSEPEDSPLVGPSKPPTPPPFDDEHAAENDLL 403
>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
Length = 811
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = +2
Query: 119 SPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQPR 298
+PL + K++ D P+ + I++ + L + +++LP K A+ +
Sbjct: 632 TPLSTTKVDELDAPLTEMIASLPPKETKATIDEELGAPLTEMISSLPRKKPRAAKDEELE 691
Query: 299 RPVATPPRCPPVKT 340
P+ PP KT
Sbjct: 692 TPLTEMVYLPPKKT 705
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 KPQNHQRDQRQMRHVAQHLN*GIQQPFS-PAR*PANQSQNQPQRSAN*KANQ 177
+P N +Q + Q N QP + P P NQ NQP N NQ
Sbjct: 215 QPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQ 266
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 27.5 bits (58), Expect = 2.9
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 IFADSSMPNHKITSGISA-RCGTLRNI*IEVSSSRSPQRDSPLISPKINPSDPPIEKPIS 178
I ++++P + +S + GTL+++ VSS + D +S + S P ++ ++
Sbjct: 958 IIYETNVPAARTARWLSCDKEGTLKDVKSTVSSCQDSDDDLGPLSQLLPSSTPQVKPAVN 1017
Query: 179 ARQELIARCCHSSPLAESVQNA-VTTLPVKAKYASTASQPRRPVATPPR 322
R + + R P S+ + + P+K +S S +R TP R
Sbjct: 1018 QRLQRLQRHATDVPTPPSLDDLDFSFSPIK---SSGLSDRKRKDVTPQR 1063
>SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8)
Length = 497
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 285 PANRGGQLPHRHDAH 329
PA+R GQ HRH+AH
Sbjct: 314 PASRDGQQVHRHEAH 328
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 200 RCCHSSPLAESVQNAVTTLPVKAKYASTA-SQPRRPVAT 313
RCC SS +S + L ++A++AST PR P A+
Sbjct: 410 RCCGSSLFLKSRYLSTNLLILRAEHASTVDGHPREPKAS 448
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 287 SQPRRPVATPPRCPPVKT 340
SQ R P +TPP PP+ T
Sbjct: 35 SQARDPASTPPPAPPIPT 52
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 27.1 bits (57), Expect = 3.9
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Frame = +2
Query: 83 IEVSSSRSPQRDSPLISPKINPSDPPIEK----PISARQELIARCCH-----SSPLAESV 235
++++S S ++PL + +PS P I+K P+ + +IA H + P + S
Sbjct: 89 VDIASYDSDNNNTPLSAG--SPSAPIIKKNTAIPVEDKYPIIAPHHHPHHYPTYPPSSSP 146
Query: 236 QNAVTTLPVKAKYASTA---SQPRRPVATPPRCPP 331
++ ++P + +S++ S P P ++PP PP
Sbjct: 147 SSSFPSVPPSSPPSSSSPSSSSPSVPPSSPPSSPP 181
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 140 INPSDPPIEKPISARQELIARCC 208
+NP DPPI+ P + RCC
Sbjct: 473 VNPLDPPIKPPNVTSSFSMIRCC 495
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 122 PLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQPRR 301
P+ +P N P K + L+++ +P + Q A T+ VK K+ + QP+
Sbjct: 345 PVETPVENKFYPTEVKDLDDPSSLMSKLIAPAP-GDKPQKAKYTIHVKPKFVNGVPQPQE 403
Query: 302 PVATPP 319
PP
Sbjct: 404 IAIMPP 409
>SB_2042| Best HMM Match : Amidase (HMM E-Value=0)
Length = 796
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 170 PISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQPRRPVATPPRCPPVKT 340
P +A + H P+A++V++A L A PR+P P PPV T
Sbjct: 653 PYTAISSMETSLDHCGPMAKTVRDAALLLEAIAGLDEEGLDPRQPREMP--VPPVYT 707
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 27.1 bits (57), Expect = 3.9
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +2
Query: 92 SSSRSPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
S SR P R S +P+ P E IS + I + S ++ A P A
Sbjct: 528 SRSRPPSRAS-------SPAAPQPEPTISQSEPTIRQS--ESAAKDTAPEAPAQPPTAAD 578
Query: 272 YASTASQPRRPVATPPRCPPVKT 340
S ++ P RP + PP+ + +
Sbjct: 579 PVSRSTTPTRPTSPPPKSTSISS 601
>SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 320
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 287 SQPRRPVATPPRCPPVKT 340
SQ R P +TPP PP+ T
Sbjct: 35 SQARDPASTPPPAPPIPT 52
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 95 SSRSPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPV 262
+S SP+ +PL PKI P E P S+ + A SP + T+PV
Sbjct: 1587 TSPSPEATNPLSDPKITTFKVP-ESPTSSIEATTAPTSADSPTVATSPIDSPTVPV 1641
>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
Length = 340
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 95 SSRSPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPV 262
+S SP+ +PL PKI P E P S+ + A SP + T+PV
Sbjct: 17 TSPSPEATNPLSDPKITTFKVP-ESPTSSIEATTAPTSADSPTVATSPIDSPTVPV 71
>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 26.6 bits (56), Expect = 5.1
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2
Query: 5 FADSSMPNHKITSGISARCGTLRNI*IEVSSSRSPQRDSPLISPKINPS---DPPIEKPI 175
+A +S+PN K +S GT+R + SS S Q L + N PP +P
Sbjct: 669 YAGTSLPNDKDSSSKQTHGGTIRVVPATNFSSPSKQHQDRLANLSANHKVDFSPPAPRPY 728
Query: 176 SA 181
A
Sbjct: 729 VA 730
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 26.6 bits (56), Expect = 5.1
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 104 SPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYAST 283
SP +P + + +DP + P + P A+ ++ + T P ST
Sbjct: 95 SPPNSTPSTAQAVANNDPTLPTPPFSTPR-------PRPKAKRIRRLLPTPPPPTPPQST 147
Query: 284 ASQPRRPVATPPRCPP 331
+PRR + TPP PP
Sbjct: 148 P-KPRRVLPTPPPKPP 162
>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
Length = 409
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Frame = +2
Query: 131 SPKINPSDPPIEKPISARQ-ELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQP---- 295
+P I P PP +PI +L+ LA + A+ T S+P
Sbjct: 251 APPIQPPRPPKSEPIQGETYDLVQEAAPPVALASQSEAALGDEFYDTAEEETESKPSPPP 310
Query: 296 ----RRPVATPPRCPPVKT 340
+ P+ TPP PP T
Sbjct: 311 PGEKKAPLPTPPSTPPAVT 329
>SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)
Length = 391
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 63 ARCATSELRYPAAVLPSEIAR 125
A A S+L +P VLP EIAR
Sbjct: 65 ANMAVSDLIFPLVVLPKEIAR 85
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 91 IQQPFSPAR*PANQSQNQPQRSAN*KANQRPPGADRQMLPQFAAGG 228
+ PF+ A + + +R+A+ A+Q G R++LPQ GG
Sbjct: 2043 LADPFTSAPFVPPKGKKITRRNASKDASQGTTGRPRRLLPQAPVGG 2088
>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 26.2 bits (55), Expect = 6.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 191 LIARCCHSSPLAESVQNAVTTLPVKAKYASTASQPRRPVATPPRCPPVKT 340
L A+ SS LA + + T+P A T + P P ATP R PP++T
Sbjct: 97 LSAKTIVSSCLATLLVRPLETIP-----APTPTTPTSP-ATPARGPPIRT 140
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 101 RSPQRDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPV 262
RSP+R SP++ PPI +P S R+ + + P++ V+++PV
Sbjct: 776 RSPKRSSPIL--------PPINRPASGRKSTTS-ASSARPVSRCSLPGVSSIPV 820
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 91 IQQPFSPAR*PANQSQNQPQRSAN*KANQRPPGADRQMLPQFAAGG 228
+ PF+ A + + +R+A+ A+Q G R++LPQ GG
Sbjct: 697 LADPFTSAPFVPPKGKKITRRNASKDASQGTTGRPRRLLPQAPVGG 742
>SB_41900| Best HMM Match : TIR (HMM E-Value=7.5)
Length = 161
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 161 IEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQPRRPVATPPRCPPV 334
I+K I + A H S + N+ T ++ K+A++ + + PR PP+
Sbjct: 81 IQKHIRKSKNTFANLKHISKFQNTFANSKTHSQIQNKFANSKTHSQIQKHIRPRLPPI 138
>SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 263 KAKYASTASQPRRPVATPPRCP 328
++ Y A+QP+ P TPPR P
Sbjct: 468 QSPYFKDAAQPKTPKWTPPRSP 489
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 26.2 bits (55), Expect = 6.8
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 113 RDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQ 292
R P+ S K+ P P + ++ + SS + ES+ V T + A+T SQ
Sbjct: 664 RIKPITSCKVFPLPEPAVAAFESIKKTVEEAFVSS-IDESIPFEVETDASEVALAATLSQ 722
Query: 293 PRRPVA 310
RPVA
Sbjct: 723 NGRPVA 728
>SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 26.2 bits (55), Expect = 6.8
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = +2
Query: 119 SPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLP----VKAKYASTA 286
+P++SP NP P PI + ++P+ N + + P + A S
Sbjct: 6 NPIMSPPTNPIMSPPTNPIMSPPTSPIMSPPTNPIMSPPTNPIMSPPTNSIMSAPTNSIM 65
Query: 287 SQPRRPVATPPRCP 328
S P P+ + P P
Sbjct: 66 SAPTNPIMSAPSNP 79
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 175 QRPPGADRQMLPQFAAGGERPERRH--HSSGEGKIRVDSQPTEEASCHT 315
Q PP A + + + AAG P R H S +G ++ PT+E H+
Sbjct: 682 QLPPEASKAVPTRLAAGSGSPARIHSPELSRKGYEDMNLSPTKEEPDHS 730
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 258 R*RQNTRRQPANRGGQLPHRHDAHR 332
R R N RR RGG RHDA +
Sbjct: 263 RTRGNNRRSQGRRGGSRGPRHDASK 287
>SB_4730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 11 DSSMPNHKITSGISARCGTLRNI 79
D SMPNH + I C +RNI
Sbjct: 18 DGSMPNHDLECQIFRYCEKVRNI 40
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 214 TVAASGDQLLAGADWLFN 161
T A SGD L G DWL N
Sbjct: 158 TCATSGDGLYEGLDWLSN 175
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 25.8 bits (54), Expect = 9.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 113 RDSPLISPKINPSDPPIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAKYASTASQ 292
R P+ S K+ P P + ++ + + S+ + ES+ V T + A+T SQ
Sbjct: 664 RIKPITSCKVFPLPEPAVAAFESIKKTVEKAFVSA-IDESIPFEVETDASEVALAATLSQ 722
Query: 293 PRRPVA 310
RPVA
Sbjct: 723 NGRPVA 728
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 25.8 bits (54), Expect = 9.0
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 86 EVSSSRSPQRDSPLISPKINPSDPPIE-KPISARQELIARCC-----HSSPLAESVQNAV 247
+++ R + S ++ I+ +PP+ K R ++ + C H L
Sbjct: 24 QINMERFNKMLSGPVARSISLVEPPLYLKERRLRDKVTSECDRELERHRRGLRSGANVNT 83
Query: 248 TTLPVKAKYASTA-SQPRRPVATPPRCPPV 334
T+ P+ A ++T SQP+ A PP PP+
Sbjct: 84 TSTPMTANQSATVTSQPQTTPAPPPPPPPL 113
>SB_19181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 25.8 bits (54), Expect = 9.0
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 95 SSRSPQRDSPLISPKINPSDP-PIEKPISARQELIARCCHSSPLAESVQNAVTTLPVKAK 271
SS S +P+IS +P DP +E+P R +SP +ES N++ + +
Sbjct: 7 SSASSTTSAPVISNSCSPGDPLVLERP-------PPRWSSNSPYSESYYNSLAVVLQRRD 59
Query: 272 YAST-ASQPRRPVATPP 319
+ + +Q R A PP
Sbjct: 60 WENPGVTQLNRLAAHPP 76
>SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 6 LRIHQCQTTKSPAGSAPDAARCATSELRYPAAVLPSEI 119
L H QT +PA + DA +R AVL SEI
Sbjct: 133 LSAHPPQTPTAPASTGSDAQSFRLQVIRDTQAVLDSEI 170
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 239 NAVTTLPVKAKYASTASQPRRPVATPPRCPP 331
NA+ + + + ++ SQ +P PPR PP
Sbjct: 183 NAIDQISIGTSHPTSPSQITQPPPPPPRPPP 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,411
Number of Sequences: 59808
Number of extensions: 261755
Number of successful extensions: 1102
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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