Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0549.Seq
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    55   9e-09
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.23 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   2.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   2.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   3.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +1

Query: 217 SSLW*RCSTVL*KAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-EN 393
           S+ + R S  + K   T   ++ K L VA +SD+GLCG +H+ +S++IR  L +P   EN
Sbjct: 72  SNKYYRVSDEVFKEAGTKAPEEGKTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFEN 131

Query: 394 IKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTF 501
             +  +G+K R  L R   +        IG   P+F
Sbjct: 132 TSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSF 167



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 24/52 (46%), Positives = 36/52 (69%)
 Frame = +2

Query: 71  YHQPNRNMATLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 226
           +H  +   ATLK I  RL S+KNI+KIT+++K V+  K TRA+R ++A+  Y
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKY 75



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 513 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESA 647
           Q+++ IL    ++    ++YNKF S VS+      LYT K+I  +
Sbjct: 172 QISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINES 216


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +1

Query: 268 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 432
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 433 LQRLYGKHIISVA 471
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 510 FVQESRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 346
           ++ ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F+Y
Sbjct: 428 YLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 618 GASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 520
           GAS+T    P + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 468  C**DWTSPTYFLGRSQLATAILT 536
            C  DW + T F G+  LAT +LT
Sbjct: 1180 CTQDWRNRTLFFGKDTLATRLLT 1202


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 301 AMTSDRGLCGAVHTGVSKVIRNRLSE 378
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 577 SSSLWYRTPSPTCPSTLRSLLRAPQADGIRL 669
           ++S WYR P    PS   +L+R  + D + L
Sbjct: 89  AASKWYRNPRKDFPSQEAALVRKKKRDALIL 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,681
Number of Sequences: 5004
Number of extensions: 70740
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)