Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0549.Seq
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 49 4e-06
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 44 1e-04
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 31 0.96
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 30 2.2
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 29 2.9
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 3.9
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157 28 6.8
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 28 6.8
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 28 9.0
08_02_0730 - 20472851-20473075,20473332-20474285 28 9.0
02_04_0275 - 21469391-21470650 28 9.0
>07_03_0571 - 19602755-19603831
Length = 358
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = +2
Query: 98 TLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 244
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVE 85
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 286 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQR 441
K V +T +RGLCG+ + V K R+ E ++ V+ VG K R
Sbjct: 111 KVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR 164
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 268 PPEDDPKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQ 438
P D K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L
Sbjct: 112 PSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLI 170
Query: 439 RLYGKHIISVANEIGRLPPTFLDEVSW 519
R +I +E+ + P + + W
Sbjct: 171 RDSKDNIEMTVSELQKNPINYTQDKEW 197
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = +2
Query: 104 KAISIRLXSVKNIQKITQSMKMVSAAK 184
+A+ R+ SV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 31.1 bits (67), Expect = 0.96
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = +1
Query: 421 SRGILQRLYGKHIISVANEIGRLPPTFLDEVSWPLPFSPQDTSLVPERSFITSSSLWYRT 600
+RG L+RL H+ V+ PP+ DE +P P+ +L+ SSLW R
Sbjct: 3 ARGALRRLIPSHLQPVSRRAPPPPPSAADEGPFPDPY-----ALLVHDPIDLLSSLWRRA 57
Query: 601 PSPTCPSTLRSLLRAPQADGIRLSGQRRTP 690
+ P+ +L P A R + TP
Sbjct: 58 FAHPLPAPFPNLSGEP-APTPRAPSRHATP 86
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -1
Query: 546 RILR*EWQWPTDFVQESRWETSNLISNTNDVLSVQSLQ 433
R+L + P D V E R T +L+S+ N++ +++SL+
Sbjct: 691 RVLNITFSKPVDMVDEVRKYTDSLVSSLNELFNLESLK 728
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 203 DLKAARPYGEGAVQFYERLRLHLPKMTPSNCLLL 304
D A+ P +++ ERL L LP TP +CLLL
Sbjct: 65 DTAASAPPSLSSLRAAERLLLSLPVATPLSCLLL 98
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 380 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 255
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
Length = 591
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 470 LMRLDVSHLLSWTKSVGHCHSHL 538
++RL HL+ KS+ CH HL
Sbjct: 547 VIRLPAQHLIKTVKSIAMCHCHL 569
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 451 KHIISVANEIGRLPPTFLDEVSWPLPFSPQDTSL 552
+H++ A E+G + PT + E S P+ S QD L
Sbjct: 50 EHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCIL 83
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = -1
Query: 489 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVR 310
E + SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 309 GHSNKQLLGVIFGRCNLSLS 250
+ LG I G C S S
Sbjct: 165 DDAVVAALGAIDGSCRPSPS 184
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 468 NTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYT 343
++ DV+ + SL+D A FI H L + + + + +H +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387
>02_04_0275 - 21469391-21470650
Length = 419
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 128 SVKNIQKITQSMKMVSAAKYTRAERD-LKAARPYGEGAVQFYERLRLHLPK 277
+++ ++ + +++ + R ERD L+AAR + VQF+ ++++ L K
Sbjct: 268 AIRRFGEVYERVELAKREQELRMERDRLEAARELEDQRVQFFLKMQMELSK 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,500,671
Number of Sequences: 37544
Number of extensions: 521187
Number of successful extensions: 1647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -