Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0549.Seq
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 32 0.42
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049) 28 6.9
SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2) 28 9.1
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 78.6 bits (185), Expect = 5e-15
Identities = 30/85 (35%), Positives = 55/85 (64%)
Frame = +1
Query: 253 KAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 432
K E+ +DPK L V ++SDRGLCG +H+G++K ++ ++ + N+ ++ GDK++ I
Sbjct: 110 KVEIKQESEDPKHLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQI 169
Query: 433 LQRLYGKHIISVANEIGRLPPTFLD 507
L R GK+++ ++G+ PP F +
Sbjct: 170 LSRTLGKNMLMSFMDVGKKPPLFCE 194
Score = 76.2 bits (179), Expect = 3e-14
Identities = 34/65 (52%), Positives = 50/65 (76%)
Frame = +2
Query: 110 ISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERLRLHLPKMTPS 289
+S+RL SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA Y+++ + P
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121
Query: 290 NCLLL 304
+ +++
Sbjct: 122 HLIVV 126
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 489 PTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATS 653
P F + LA IL +G++F +G + YN F+SVVS+ S +Y+ ++ +A S
Sbjct: 189 PPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNAAS 243
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/29 (51%), Positives = 25/29 (86%)
Frame = +2
Query: 653 LTAYDSLDSDVLQSYTEFSLASLLFYALK 739
+++YD LDS+V++ Y EF+LAS+LF+ +K
Sbjct: 246 MSSYDELDSEVIRCYQEFNLASMLFFGMK 274
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 232 RCSTVL*KAEVTPPEDDPKQLFVAMTSDRGLCG 330
RCST+L K E+ P +DD KQ F D G G
Sbjct: 485 RCSTILIKGELKPLDDDMKQAFEMAYLDLGGMG 517
>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 621 YTKKSIESATS*RHTTLWTATYSNPTRSSRWPRC 722
Y K S T+ H LW A+ S+ R +W C
Sbjct: 602 YNNKQYHSCTTFDHYRLWCASTSDYDRDKKWGNC 635
>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1868
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 278 SSGGVTSAFHRTVLHLHHRDEQLSGHAQHGC 186
S G + +R LH+ H +++L H H C
Sbjct: 1059 SLGNCDGSSNRNTLHVKHANQRLGSHGNHSC 1089
>SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -2
Query: 569 NDLSGTKLVS*GENGSGQLTSSKKVGGRRPISLATLMMCFPYNLCRIPRDLSPTQITLMF 390
ND+ T+ GE+ +G +T ++ + GR ++ + FP + C + T I+++F
Sbjct: 21 NDIKNTRAQVWGES-AGDITETRGLRGRALSLASSASLVFPSHECLLDPTSCTTGISVLF 79
Query: 389 SAPGSLRRL 363
S RR+
Sbjct: 80 WFKYSERRM 88
>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
Length = 370
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 477 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVRGHSN 298
LI N DV +D+ + HTD+ V +R E V DH T+ + + S + S+
Sbjct: 62 LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120
Query: 297 KQ 292
Q
Sbjct: 121 SQ 122
>SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 490 PPTFLDEVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCP 618
PPT+L +P P + VP + L Y P PT P
Sbjct: 151 PPTYLHPSQYPPSPPPWELPRVPSANATLPPHLQYGPPPPTSP 193
>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
Length = 379
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 272 GGVTSAF-HRTVLHLHHRDEQLSGHAQHGCI*QLTPSSWTV*FSG 141
GGV F TV+ H L H +H + LT SWTV F+G
Sbjct: 244 GGVEFIFLMETVIQPRHPRLSLYSHREH--VPDLTHDSWTVPFTG 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,361,014
Number of Sequences: 59808
Number of extensions: 569583
Number of successful extensions: 1855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1855
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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