Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0549.Seq
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical ...    88   7e-18
AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical ...    88   7e-18
AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical ...    88   7e-18
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z46381-5|CAD92392.1|  328|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger pro...    29   4.6  
U58745-2|AAU05593.1|  569|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U58745-1|AAB00620.2|  574|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL117202-2|CAB55092.1|  302|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18c protein.
          Length = 200

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 39/78 (50%), Positives = 53/78 (67%)
 Frame = +1

Query: 274 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 453
           ++  KQ+ V +TSDRGLCG VH+ + K  +N L+  G + I+V+ +GDKSR  LQRLY  
Sbjct: 90  QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149

Query: 454 HIISVANEIGRLPPTFLD 507
            I+   NEIGR PP+F D
Sbjct: 150 SILLSGNEIGRAPPSFAD 167



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/58 (68%), Positives = 47/58 (81%)
 Frame = +2

Query: 86  RNMATLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERL 259
           R  ATLK ISIRL SVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F++ +
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80


>AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18a protein.
          Length = 299

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 39/78 (50%), Positives = 53/78 (67%)
 Frame = +1

Query: 274 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 453
           ++  KQ+ V +TSDRGLCG VH+ + K  +N L+  G + I+V+ +GDKSR  LQRLY  
Sbjct: 90  QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149

Query: 454 HIISVANEIGRLPPTFLD 507
            I+   NEIGR PP+F D
Sbjct: 150 SILLSGNEIGRAPPSFAD 167



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/58 (68%), Positives = 47/58 (81%)
 Frame = +2

Query: 86  RNMATLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERL 259
           R  ATLK ISIRL SVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F++ +
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +3

Query: 486 SPTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIES 644
           +P  F   S  A AIL SGY+F +G I++N+FK+VVSY  S L +   ++I++
Sbjct: 161 APPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLEAIKA 213



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 644 RHKLTAYDSLDSDVLQSYTEFSLASLLFYALK 739
           +  L+ YDS+D DVLQSY+E+SLA L++Y +K
Sbjct: 214 KEALSTYDSVDDDVLQSYSEYSLAQLIYYGMK 245


>AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18b protein.
          Length = 313

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 39/78 (50%), Positives = 53/78 (67%)
 Frame = +1

Query: 274 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 453
           ++  KQ+ V +TSDRGLCG VH+ + K  +N L+  G + I+V+ +GDKSR  LQRLY  
Sbjct: 90  QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149

Query: 454 HIISVANEIGRLPPTFLD 507
            I+   NEIGR PP+F D
Sbjct: 150 SILLSGNEIGRAPPSFAD 167



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/58 (68%), Positives = 47/58 (81%)
 Frame = +2

Query: 86  RNMATLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERL 259
           R  ATLK ISIRL SVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F++ +
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +3

Query: 486 SPTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIES 644
           +P  F   S  A AIL SGY+F +G I++N+FK+VVSY  S L +   ++I++
Sbjct: 161 APPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLEAIKA 213



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 644 RHKLTAYDSLDSDVLQSYTEFSLASLLFYALK 739
           +  L+ YDS+D DVLQSY+E+SLA L++Y +K
Sbjct: 214 KEALSTYDSVDDDVLQSYSEYSLAQLIYYGMK 245


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 490  PPTFLDEVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLLRAPQADG 660
            PPT       P+P + Q +  VP +S  +SSS     P P   + L S+  AP   G
Sbjct: 1546 PPTNSFGTVLPVPHTFQTSVRVPTQSLFSSSSTTTVQPQPEKKNVLPSIDSAPSTPG 1602


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 490  PPTFLDEVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLLRAPQADG 660
            PPT       P+P + Q +  VP +S  +SSS     P P   + L S+  AP   G
Sbjct: 1549 PPTNSFGTVLPVPHTFQTSVRVPTQSLFSSSSTTTVQPQPEKKNVLPSIDSAPSTPG 1605


>Z46381-5|CAD92392.1|  328|Caenorhabditis elegans Hypothetical
           protein M01F1.8a protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 460 ISVANEIGRLPPTFLDEVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLL 639
           I V N  GR     + +     P   Q   L P    + S+S W   P+PT P T++  L
Sbjct: 185 IDVPNAHGRQTYRVIPKAGVCPPAPLQQRPLAPPNPQVPSTSAWNIAPTPT-PVTVQRPL 243

Query: 640 RAP 648
           R P
Sbjct: 244 RKP 246


>Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical
           protein F45B8.4 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 472 NEIGRLPPTFLDE-VSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 609
           N +G  P  FL+  + W          ++P+     S+S+W RTP+P
Sbjct: 73  NILGNFPFGFLNAPMFWQQYLRSMAMGIIPQNPESPSASVWNRTPTP 119


>Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical
           protein T01B7.6 protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -2

Query: 422 DLSPTQITLMFSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSAF 252
           D   T    M +  G LR   +   TPV     +PL      +N LGSS G ++S F
Sbjct: 544 DFKMTSSIPMTNGLGHLRLGSVWSGTPVEAKQEEPLHYFQQQDNFLGSSFGPISSTF 600


>U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger
           protein PAG-3 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 472 NEIGRLPPTFLDE-VSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 609
           N +G  P  FL+  + W          ++P+     S+S+W RTP+P
Sbjct: 73  NILGNFPFGFLNAPMFWQQYLRSMAMGIIPQNPESPSASVWNRTPTP 119


>U58745-2|AAU05593.1|  569|Caenorhabditis elegans Hypothetical
           protein C10G6.1b protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 280 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 393
           +PK+L   +  +RGL       VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266


>U58745-1|AAB00620.2|  574|Caenorhabditis elegans Hypothetical
           protein C10G6.1a protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 280 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 393
           +PK+L   +  +RGL       VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266


>AL117202-2|CAB55092.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.2 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 513 DFVQESRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVAD 358
           +  Q  +W+ +  ++      SV S+Q    F   T  LD LST  A  V D
Sbjct: 183 EICQLEQWKMTKSLNAHGGKFSVDSIQHLFHFTEFTITLDTLSTEDAINVRD 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,444
Number of Sequences: 27780
Number of extensions: 410870
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)