Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0549.Seq
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    27   0.24 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.0  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   4.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 452 STSLVLLMRLDVSHLLSWTKSVGHCHSHLRI 544
           S +L+L   L +S    W K++G C SH+ I
Sbjct: 29  SYALILFNILHMSSAEGWFKAIGTCGSHIII 59


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 31 LRTGCGHPSRGGGLPSAKQ 87
          L + C  PSRG  +PS+++
Sbjct: 12 LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 31 LRTGCGHPSRGGGLPSAKQ 87
          L + C  PSRG  +PS+++
Sbjct: 12 LLSSCTRPSRGNAVPSSQR 30


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 458 MCFPYNLCRIPRDLSPTQITL 396
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 569 NDLSGTKLVS*GENGSGQLTSSKKVGG 489
           N + GTK+ +  +NGS Q+  S+   G
Sbjct: 395 NLVKGTKIDNWWDNGSNQIAFSRGCSG 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,453
Number of Sequences: 438
Number of extensions: 4992
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)