Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0549.Seq
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 49 4e-06
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 44 1e-04
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 43 2e-04
At1g13530.1 68414.m01586 expressed protein ; expression support... 31 0.61
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 30 1.9
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 30 1.9
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 30 1.9
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 4.3
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 4.3
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 5.7
At4g23060.1 68417.m03325 calmodulin-binding family protein conta... 28 7.5
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 7.5
At3g21200.1 68416.m02679 expressed protein 28 7.5
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 27 9.9
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 27 9.9
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 27 9.9
At1g13940.1 68414.m01637 expressed protein 27 9.9
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +2
Query: 95 ATLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 244
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVE 100
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 286 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRG-ILQRLY 447
K V +T DRGLCG + + K R+ E ++ VI VG K L+R Y
Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPY 182
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +1
Query: 268 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQR 441
P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+ R
Sbjct: 98 PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157
Query: 442 LYGKHIISVANEIGRLP 492
I+ E+ + P
Sbjct: 158 DSKNDIVLSVTELNKNP 174
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/33 (54%), Positives = 28/33 (84%)
Frame = +2
Query: 86 RNMATLKAISIRLXSVKNIQKITQSMKMVSAAK 184
R+++T + + R+ SVKNIQKIT++MKMV+A+K
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 486 SPTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIE 641
+P + S LA IL + EF + +I+YNKF SVV++ + + + + IE
Sbjct: 173 NPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIE 223
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +2
Query: 95 ATLKAISIRLXSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 244
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVE 110
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 298 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQR 441
V +T D+GLCG + V+K R+ E I VI VG K R
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR 189
>At1g13530.1 68414.m01586 expressed protein ; expression supported
by MPSS
Length = 385
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 487 LPPTFLDEVSWPLPFS-PQDTSLVPERSFITSSSLWYRTP 603
+PP FL W +PFS QD L+ + + + L Y P
Sbjct: 167 IPPRFLRRKGWTVPFSASQDYGLIDDAKGVVDAKLRYELP 206
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 489 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 346
E S ++ N+ D + + TARF++H H+D+ RF T H +Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -2
Query: 392 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS----SGGVTSAFHRT 243
F APGSL +T P+C++ + + + NN G S G TS ++ T
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYSFRYGDGSGTSGYYMT 200
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -2
Query: 392 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS----SGGVTSAFHRT 243
F APGSL +T P+C++ + + + NN G S G TS ++ T
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYSFRYGDGSGTSGYYMT 205
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 473 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 333
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 473 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 333
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 489 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 376
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At4g23060.1 68417.m03325 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 543
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 596 RYHRLELVINDLSGTKLVS*GENGSGQLTSSKKVGGRRPISLATLMMCFPYNL 438
R H L + T+++ E+ S Q ++K + P+SL M P+NL
Sbjct: 214 RMHALVRAQARVRATRVIVTPESSSSQSNNTKSSHFQNPVSLVKFPMIVPFNL 266
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 420 FISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVRGHSNKQLLG 283
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At3g21200.1 68416.m02679 expressed protein
Length = 317
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 389 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSAFH 249
S P SLR + TLDTP + HKP ++ + SS G +++ H
Sbjct: 35 SRPISLRCSVSTTLDTPATASTHKPFPAEVSRSIMELSSVGTLSTLTH 82
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 281 SSSGGVTSAFHRTVLHLHHRDEQLSG 204
S SG +TS+ RT+ H H D L G
Sbjct: 47 SDSGSITSSPTRTIEHQSHEDSGLEG 72
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 683 RRCPESRMPSACGALNRLLSVEGQVGLGVRYHRLE 579
R CP++ + A G L R V GQV + R +E
Sbjct: 640 RFCPDASLSGAAGTLRRPAEVLGQVHVATRMKPVE 674
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 641 LNRLLSVEGQVGLGVRYHRLELVINDLSGTKLVS*GENG 525
+ R+L +EG +G+ LE D+S TK + GE+G
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHG 342
>At1g13940.1 68414.m01637 expressed protein
Length = 1005
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 263 TSAFHRTVLHLHHRDEQLSGHAQHGCI*QLTPSS 162
T++ H V+H +H D L+ H Q + P S
Sbjct: 383 TNSSHEAVIHQNHLDSSLTSHQQRPLYPYIRPDS 416
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,930
Number of Sequences: 28952
Number of extensions: 395328
Number of successful extensions: 1143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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