Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0548.Seq
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.75 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   7.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.0  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    26   7.0  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   9.3  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 290 FWGRGAVKH*IGTLKGAPDL 349
           +WGR   +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 251 PDRRFFAL*RWSPRSLIVDSCSK 183
           PD +FF +  W P  L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 699 GEQKQEGKMPQKRE*GRHGNVEYSYSSFFNIIEAFIRVIVS*AD 568
           G+ K+  K    +E   +G  +YSYS+  N++    R  VS  D
Sbjct: 8   GDSKEPPKHGNSKEKPNYGQSQYSYSAMSNLVTQADRRFVSRRD 51


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 SPRSLIVDSCSKLEQHSTLSRSILLI 141
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 87  VKSAHFLTNRPKSAKSLINQKNRP 158
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 437 RSRCA*PPHPPRLMRRYRARQVALSGKCA---RNPYLFIFLNTFKYVSAHETITLINA 601
           R   A PPHPP++M    +  +A  G  A   ++  + I + + + +SAH  +  I A
Sbjct: 323 RHGSATPPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQSNRKISAHGFLASIFA 380


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 164 GLSVVP--VWNKSPLLKNVDSNVKGRKTVYQGVAHYVNHHPNQVFWGRGAVKH*IGTL 331
           G S+VP   + +S + + VD+N + R   +Q +   +       F+GRG +    G +
Sbjct: 227 GSSLVPCFAFGESDIFEQVDNNPRTRIYKFQEIVKKIAGFTVPFFYGRGLLNKTFGLM 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,749
Number of Sequences: 5004
Number of extensions: 64961
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)