Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0548.Seq
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U60800-1|AAC50810.1|  862|Homo sapiens semaphorin protein.             33   0.88 
BC054500-1|AAH54500.1|  862|Homo sapiens sema domain, immunoglob...    33   0.88 
AL929575-4|CAI43250.2|  862|Homo sapiens sema domain, immunoglob...    33   0.88 
AL590233-3|CAI17379.2|  862|Homo sapiens sema domain, immunoglob...    33   0.88 
AB210030-1|BAE06112.1|  870|Homo sapiens SEMA4D variant protein ...    33   0.88 

>U60800-1|AAC50810.1|  862|Homo sapiens semaphorin protein.
          Length = 862

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 713 HQRFW-VSKNRKAKCRKKGNKGDTEMLN 633
           H+ +W VS+++KAKC +KG    TE LN
Sbjct: 83  HEVYWKVSEDKKAKCAEKGKSKQTECLN 110


>BC054500-1|AAH54500.1|  862|Homo sapiens sema domain,
           immunoglobulin domain (Ig), transmembrane domain (TM)
           and short cy protein.
          Length = 862

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 713 HQRFW-VSKNRKAKCRKKGNKGDTEMLN 633
           H+ +W VS+++KAKC +KG    TE LN
Sbjct: 83  HEVYWKVSEDKKAKCAEKGKSKQTECLN 110


>AL929575-4|CAI43250.2|  862|Homo sapiens sema domain,
           immunoglobulin domain (Ig), transmembrane domain (TM)
           and short cy protein.
          Length = 862

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 713 HQRFW-VSKNRKAKCRKKGNKGDTEMLN 633
           H+ +W VS+++KAKC +KG    TE LN
Sbjct: 83  HEVYWKVSEDKKAKCAEKGKSKQTECLN 110


>AL590233-3|CAI17379.2|  862|Homo sapiens sema domain,
           immunoglobulin domain (Ig), transmembrane domain (TM)
           and short cy protein.
          Length = 862

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 713 HQRFW-VSKNRKAKCRKKGNKGDTEMLN 633
           H+ +W VS+++KAKC +KG    TE LN
Sbjct: 83  HEVYWKVSEDKKAKCAEKGKSKQTECLN 110


>AB210030-1|BAE06112.1|  870|Homo sapiens SEMA4D variant protein
           protein.
          Length = 870

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 713 HQRFW-VSKNRKAKCRKKGNKGDTEMLN 633
           H+ +W VS+++KAKC +KG    TE LN
Sbjct: 91  HEVYWKVSEDKKAKCAEKGKSKQTECLN 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,786,876
Number of Sequences: 237096
Number of extensions: 2379614
Number of successful extensions: 8390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8390
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)