Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0548.Seq
         (783 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L35770-1|AAA64525.1|  412|Drosophila melanogaster fringe protein...    31   1.3  
AY070927-1|AAL48549.1|  412|Drosophila melanogaster RE03010p pro...    31   1.3  
AE014296-3445|AAF51658.2|  412|Drosophila melanogaster CG10580-P...    31   1.3  
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.         30   3.1  
AY060779-1|AAL28327.1|  387|Drosophila melanogaster GH24644p pro...    29   9.5  
AE014296-415|AAF47615.1|  485|Drosophila melanogaster CG13810-PA...    29   9.5  
AE013599-672|AAF59071.1|  387|Drosophila melanogaster CG8735-PA ...    29   9.5  

>L35770-1|AAA64525.1|  412|Drosophila melanogaster fringe protein
           protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 530 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILP-SCFCSPR 703
           P  FI  +TF+   +     + N   ++K + ++  T P R YSL C + P   FC PR
Sbjct: 354 PMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHCQLFPYFSFCPPR 412


>AY070927-1|AAL48549.1|  412|Drosophila melanogaster RE03010p
           protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 530 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILP-SCFCSPR 703
           P  FI  +TF+   +     + N   ++K + ++  T P R YSL C + P   FC PR
Sbjct: 354 PMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHCQLFPYFSFCPPR 412


>AE014296-3445|AAF51658.2|  412|Drosophila melanogaster CG10580-PA
           protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 530 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILP-SCFCSPR 703
           P  FI  +TF+   +     + N   ++K + ++  T P R YSL C + P   FC PR
Sbjct: 354 PMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHCQLFPYFSFCPPR 412


>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
          Length = 1494

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 244  DGFSPFDVGVHVL**WTLVPNWNNTQPYLGLFF*FIRDFADFGLLVKK*ADLTK 83
            DG  P D G+  +  + +  N +  Q +LGL   F R   DF  L K   D+ K
Sbjct: 923  DGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRFIKDFSRLAKPLHDILK 976


>AY060779-1|AAL28327.1|  387|Drosophila melanogaster GH24644p
           protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 608 ILKKEEYEYSTFPCRPYSLFCGIL 679
           +L KEEYEY+TF C     FC +L
Sbjct: 277 MLPKEEYEYTTFRC----AFCNVL 296


>AE014296-415|AAF47615.1|  485|Drosophila melanogaster CG13810-PA
           protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 614 KKEEYEYSTFPCRPYSLFCGILPSCFCSPRNAGES 718
           KK++Y Y  +    Y L C ++ SCF   R    S
Sbjct: 70  KKQQYSYDHYYIIFYGLLCSLMGSCFMLTRQLAVS 104


>AE013599-672|AAF59071.1|  387|Drosophila melanogaster CG8735-PA
           protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 608 ILKKEEYEYSTFPCRPYSLFCGIL 679
           +L KEEYEY+TF C     FC +L
Sbjct: 277 MLPKEEYEYTTFRC----AFCNVL 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,971,125
Number of Sequences: 53049
Number of extensions: 710338
Number of successful extensions: 1738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)