Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0548.Seq
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    31   0.86 
At4g33630.2 68417.m04778 expressed protein                             28   8.0  
At4g33630.1 68417.m04777 expressed protein                             28   8.0  
At2g02890.1 68415.m00239 F-box family protein contains Pfam PF00...    28   8.0  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 154 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREP 273
           D+D  E CS+ E ES ++E  L +++A N++ GR  L  P
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGRDLLVTP 472


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 420 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 322
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 420 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 322
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At2g02890.1 68415.m00239 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 531

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 530 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTF 643
           P L  F  TF  +  +E    +NAS+ + +E   YS+F
Sbjct: 97  PALLCFCETFGSLKGYEVENHMNASVTMLEEAIMYSSF 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,213
Number of Sequences: 28952
Number of extensions: 341015
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)