Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0547.Seq
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   2.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   3.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   5.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   8.9  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 119 TSNVAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKL 289
           T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 721 GNGESGFDSGRGSLRNGYQHPRKAAGAQ 638
           G G  G   GRG  RN Y   R + G+Q
Sbjct: 390 GRGRGGRGRGRGYARNQYNQYRNSNGSQ 417


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 92  FVLRRSKNFTSNVAIRIHPVIPINHYLGVLK-TNKIEPRSYSIIPCTKY 235
           F ++ S + +++++I  HP +PINH     K  N+    +   +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 558 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 659
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 134 IRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTK--YSSSIFSRFEHSNLFKV 283
           + +HP +P   YL   K  +I   +YS +      Y+S I    EH  L  +
Sbjct: 189 MELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKLIEHKTLVDI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,972
Number of Sequences: 5004
Number of extensions: 60411
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)