Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0547.Seq
(759 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 29 3.1
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 28 7.2
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) 28 7.2
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -2
Query: 113 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
SWI RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2
Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDT 15
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = -2
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -2
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 117 KFLDRRKTNISESICQRCFHQSRTKV 40
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 182 KTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHL 301
K + ++ Y+ + +S F RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3
Query: 687 PLPESNPDSPLPVTTM 734
P PESNP+SP PV TM
Sbjct: 113 PSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3
Query: 687 PLPESNPDSPLPVTTM 734
P PESNP+SP PV TM
Sbjct: 57 PSPESNPNSPSPVVTM 72
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 709 SGFDSGRGSLRNGYQHPRKAAGAQITHSRHGEVVTKNNDTGLLRGLVIG 563
SG SG +G R + + ++H HG T+N +G+ L G
Sbjct: 656 SGVSSGSHGNFSGNGIYRSRSTSNLSHGNHGSTTTRNMSSGIQSNLAFG 704
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 521 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 646
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 472 SIRYWSWNYRGCCTRLALQLFLVKIFKVYS 561
S+R W + +R C + LA QLF V + + S
Sbjct: 1135 SLRLWGYKWRKCDSTLAKQLFSVLVQAILS 1164
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 206 SYSIIPCTKYSSSIFSRFEH 265
+Y IPCT Y+ +++SRF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146
>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
Length = 605
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 206 SYSIIPCTKYSSSIFSRFEH 265
+Y IPCT Y+ +++SRF H
Sbjct: 58 TYRGIPCTNYTENLWSRFWH 77
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 294 PTSTLTEEXXXYDFDIEPAFFRTPAHRDMLRKR 392
P T+ YD+++EPAF R R+ +R R
Sbjct: 35 PQVTMPIPHPMYDYNLEPAFIRKRNERERIRVR 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,817,262
Number of Sequences: 59808
Number of extensions: 473450
Number of successful extensions: 1136
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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