Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0547.Seq
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   7.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   7.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   7.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   7.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 695 RKREPEKRLPTSKEGSRRANYPLPARGGSD 606
           +K   +K++ +SK GS+ AN P P    +D
Sbjct: 340 KKESDDKKVISSKSGSK-ANSPFPGSTEAD 368


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 672 PFLRLPLPESNPDS 713
           PFL LPL   +PDS
Sbjct: 319 PFLMLPLGADDPDS 332


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +3

Query: 648 AAFLGCW*PFLRLPLPE---SNPDS 713
           +AF+ CW PF  L L      NPD+
Sbjct: 379 SAFIVCWLPFFVLALVRPFLKNPDA 403


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 105  RRKTNISESICQRCFHQ 55
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 662  SKEGSRRANYPLPARGGSDEK*RYG 588
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 457 NRNNFSIRYWSWNYRGCCTRL 519
           N NN+   Y + NY   C +L
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKL 112


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 457 NRNNFSIRYWSWNYRGCCTRL 519
           N NN+   Y + NY   C +L
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 457 NRNNFSIRYWSWNYRGCCTRL 519
           N NN+   Y + NY   C +L
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 457 NRNNFSIRYWSWNYRGCCTRL 519
           N NN+   Y + NY   C +L
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKL 112


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 448 SFFNRNNFSIRYWSWNY 498
           +++N NN+   Y++ NY
Sbjct: 316 NYYNNNNYKKLYYNINY 332


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 454 FNRNNFSIRYWSWNYRGCCTRL 519
           +N NN++   ++ NY   C +L
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,560
Number of Sequences: 438
Number of extensions: 4534
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)