Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0547.Seq
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    30   1.5  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   7.7  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    28   7.7  
At1g10780.1 68414.m01235 F-box family protein  ; similar to SKP1...    28   7.7  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 564 PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCW*PFLRLPLPESNPDSPLPVT 728
           PI+ P KSP +    TTSP +   + +P        P      P  +P SP PV+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTT-APAKTPTASASSPVESPKSPAPVS 77


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 515 DLPSNCSSLKYLKCTHSDYE 574
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 481 YWSWNYRGCCTRLALQLFLVK-IFKVYSFRLRGLVRVPYRYFSSL 612
           YW+     CCTRL    +  + IF   +F    +V   ++YFS +
Sbjct: 40  YWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMFKYFSKM 84


>At1g10780.1 68414.m01235 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 418

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 288 NFTLNKLECSKRLKMLLEYFVHGIIE-YDLGSILLVFRTPR**LIGITGCIRIATLEVKF 112
           N  L   E  K + + L Y  H  ++ Y  G+ LLV  + R   + + GC  I   E KF
Sbjct: 178 NLLLLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKF 237

Query: 111 L 109
           L
Sbjct: 238 L 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,794,823
Number of Sequences: 28952
Number of extensions: 321454
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)