Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0544.Seq
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 184 4e-47
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 184 5e-47
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 184 5e-47
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 182 1e-46
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 182 2e-46
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 182 2e-46
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 182 2e-46
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 182 3e-46
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 182 3e-46
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 164 5e-41
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 157 6e-39
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 156 1e-38
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 110 7e-25
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 95 3e-20
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 83 2e-16
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 68 5e-12
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 63 2e-10
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 57 9e-09
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 49 3e-06
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.099
At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identica... 32 0.30
At3g28790.1 68416.m03593 expressed protein 31 0.92
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 30 1.2
At5g38560.1 68418.m04662 protein kinase family protein contains ... 30 1.6
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 30 1.6
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 30 1.6
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.6
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 30 1.6
At5g18270.2 68418.m02148 no apical meristem (NAM) family protein... 29 2.1
At5g18270.1 68418.m02147 no apical meristem (NAM) family protein... 29 2.1
At2g39480.1 68415.m04845 ABC transporter family protein related ... 29 2.1
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 29 2.8
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 29 2.8
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 2.8
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 29 2.8
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 3.7
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 3.7
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 28 4.9
At1g66180.1 68414.m07512 aspartyl protease family protein contai... 28 4.9
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 28 4.9
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 28 6.5
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 8.6
At4g17410.1 68417.m02607 expressed protein 27 8.6
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 8.6
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 8.6
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 8.6
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 184 bits (449), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYAS 147
Score = 115 bits (277), Expect = 3e-26
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLTDYLMKILTERGYS
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 201
Score = 108 bits (260), Expect = 3e-24
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 184 bits (448), Expect = 5e-47
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYAS 147
Score = 113 bits (272), Expect = 1e-25
Identities = 52/54 (96%), Positives = 54/54 (100%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLTD+LMKILTERGYS
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYS 201
Score = 108 bits (260), Expect = 3e-24
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 184 bits (448), Expect = 5e-47
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYAS 147
Score = 113 bits (272), Expect = 1e-25
Identities = 52/54 (96%), Positives = 54/54 (100%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLTD+LMKILTERGYS
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYS 201
Score = 108 bits (260), Expect = 3e-24
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 182 bits (444), Expect = 1e-46
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNVPAMYVAIQAVLSLYAS 147
Score = 110 bits (264), Expect = 9e-25
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGY 667
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLTD LMKILTERGY
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGY 200
Score = 108 bits (260), Expect = 3e-24
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 182 bits (443), Expect = 2e-46
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYAS 147
Score = 111 bits (266), Expect = 5e-25
Identities = 50/53 (94%), Positives = 53/53 (100%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGY 667
GRTTGIVLDSGDGVSHTVPIYEG+++PHAILRLDLAGRDLTDYLMKILTERGY
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGY 200
Score = 104 bits (249), Expect = 6e-23
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQ K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 182 bits (443), Expect = 2e-46
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYAS 147
Score = 111 bits (266), Expect = 5e-25
Identities = 50/53 (94%), Positives = 53/53 (100%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGY 667
GRTTGIVLDSGDGVSHTVPIYEG+++PHAILRLDLAGRDLTDYLMKILTERGY
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGY 200
Score = 104 bits (249), Expect = 6e-23
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQ K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 182 bits (443), Expect = 2e-46
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYAS 147
Score = 111 bits (266), Expect = 5e-25
Identities = 50/53 (94%), Positives = 53/53 (100%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGY 667
GRTTGIVLDSGDGVSHTVPIYEG+++PHAILRLDLAGRDLTDYLMKILTERGY
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGY 200
Score = 104 bits (249), Expect = 6e-23
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQ K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 182 bits (442), Expect = 3e-46
Identities = 82/85 (96%), Positives = 83/85 (97%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYAS 147
Score = 111 bits (268), Expect = 3e-25
Identities = 52/54 (96%), Positives = 53/54 (98%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLTD LMKILTERGYS
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS 201
Score = 108 bits (260), Expect = 3e-24
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 182 bits (442), Expect = 3e-46
Identities = 82/85 (96%), Positives = 83/85 (97%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYAS 147
Score = 111 bits (268), Expect = 3e-25
Identities = 52/54 (96%), Positives = 53/54 (98%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLTD LMKILTERGYS
Sbjct: 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS 201
Score = 108 bits (260), Expect = 3e-24
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 164 bits (398), Expect = 5e-41
Identities = 70/85 (82%), Positives = 80/85 (94%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
+RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPLNPK NREKMT
Sbjct: 64 RRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMT 123
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFE+F P+MY+ IQAVLSLY+S
Sbjct: 124 QIMFESFAFPSMYIGIQAVLSLYSS 148
Score = 107 bits (256), Expect = 9e-24
Identities = 48/54 (88%), Positives = 52/54 (96%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTGIVLDSGDGVSHTVPIYEGYA+PHAILRLDLAGRDLT+YL KI+ ERGY+
Sbjct: 149 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLTKIMMERGYT 202
Score = 101 bits (243), Expect = 3e-22
Identities = 44/59 (74%), Positives = 53/59 (89%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEAQ +
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQAR 64
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 157 bits (381), Expect = 6e-39
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
+ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEAPLNPKA+REKMT
Sbjct: 18 RSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMT 77
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QIMFETF P+MY+ +QA LSL+AS
Sbjct: 78 QIMFETFAVPSMYIGMQAALSLHAS 102
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTG VLDSGDGVS+ VPIYEG A+PHAILRLDLAGR LT+YLMKI+ ERGY+
Sbjct: 103 GRTTGTVLDSGDGVSYIVPIYEGSALPHAILRLDLAGRHLTNYLMKIMMERGYT 156
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 156 bits (379), Expect = 1e-38
Identities = 74/103 (71%), Positives = 83/103 (80%)
Frame = +3
Query: 201 RDGRYGTEGLLCRR*GTEKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 380
RDG E + G R ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDGLNPNESYVGEE-GHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 381 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 509
VLLTEAP NPKANREKMTQIMFE+F+ PAMYV++Q+VL LY+S
Sbjct: 94 VLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSS 136
Score = 99.1 bits (236), Expect = 2e-21
Identities = 42/54 (77%), Positives = 50/54 (92%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
GRTTG+VLD G+ VSHTVP+YEGYA+PH ILRLDL GRDLTDYL++I+TERGY+
Sbjct: 137 GRTTGVVLDLGERVSHTVPVYEGYALPHGILRLDLGGRDLTDYLIEIMTERGYT 190
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 246
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEE 48
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 110 bits (265), Expect = 7e-25
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +3
Query: 249 TEKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 428
+E R L + YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PLNP NREK
Sbjct: 60 SELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREK 119
Query: 429 MTQIMFETFNTPAMYVAIQAVLSLYA 506
M + MFE +N +++ IQAVL+LYA
Sbjct: 120 MIETMFEKYNFAGVFIQIQAVLTLYA 145
Score = 71.7 bits (168), Expect = 4e-13
Identities = 28/54 (51%), Positives = 42/54 (77%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERGYS 670
G TG+V+DSGDGV+H VP+ +GY+ PH R+++AGR +T YL+ +L+ RGY+
Sbjct: 147 GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITAYLVDLLSRRGYA 200
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGD 243
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGE 57
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/78 (52%), Positives = 54/78 (69%)
Frame = +3
Query: 273 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 452
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL P +RE +I+FET
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFET 145
Query: 453 FNTPAMYVAIQAVLSLYA 506
FN P +Y+A+ +VL+L A
Sbjct: 146 FNVPGLYIAVNSVLALAA 163
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +2
Query: 518 TGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERG 664
TG+V+D GDG +H VP+ EGY I I + +AG+D+T ++ +++ ERG
Sbjct: 173 TGVVVDVGDGATHVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQLMRERG 221
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 94 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 180
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/85 (41%), Positives = 56/85 (65%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 434
+R + + PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + REK
Sbjct: 85 RRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAA 144
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
++MFE + PA+++A VL+ +A+
Sbjct: 145 ELMFEKYKVPALFMAKNPVLTSFAT 169
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 183
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 509 GRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILTERG 664
GR T +V+D G G + P+++GY + A++ L G LTD L+K L +G
Sbjct: 170 GRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKG 221
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFN 458
PIE G++ +WD ME + + Y L E +L T+ PKA RE++ Q+MFETFN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 459 TPAMYVAIQAVLSLYA 506
Y + QAVLSLYA
Sbjct: 117 VSGFYASEQAVLSLYA 132
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 186
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 428
+R + + P + GIVT+WD ++ +W H F N L + P EHP+LL E PLN + REK
Sbjct: 79 RRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 183
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 273 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 452
++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120
Query: 453 FNTPAMYVA-IQAVLSLYASVVPPVS 527
F ++Y+A Q+++ LY + P S
Sbjct: 121 FGFSSLYIAHPQSLVHLYEASRQPDS 146
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 440 HVRNIQHARHVRRHPSRALAVRVGRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAG 619
H +++ H R P L+ +V+D G +H VP+ + + HAI R+DL G
Sbjct: 130 HPQSLVHLYEASRQPDSILSKT---QCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGG 186
Query: 620 RDLTDYLMKILTER 661
+ T+YL ++++ R
Sbjct: 187 KAFTNYLKELVSYR 200
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 189
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 458
P + +V ++ ME I + F + +HP+L+TE NP +R KM +++FET+
Sbjct: 85 PFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYG 144
Query: 459 TPAMYVAIQAVLS 497
PA+ + A S
Sbjct: 145 VPAVAFGVDAAFS 157
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 243
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGD 66
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 521 GIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKILT 655
GIVL G +H++P +G I R ++ G +TDYL ++L+
Sbjct: 171 GIVLCPGFTTTHSIPFVDGEPIYKGSSRTNIGGYHVTDYLKQLLS 215
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 218 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 81
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identical
to gi|3883122|gb|AAC77824; supported by cDNA
gi|3883121|gb|AF082299
Length = 131
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 507 SVVPPVSCWTPATVSPTPCPSTKDTQSPTPSCVWT*PVAT-SQTTS*RSSPNA 662
+ +PPV+ TP+ ++ P P + T +PT S T PVA+ QT + P+A
Sbjct: 36 TALPPVTAETPSPIASPPVPVNEPTPAPTTSPT-TSPVASPPQTDAPAPGPSA 87
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 507 SVVPPVSCWTPATVSP-TPCPSTKDTQSPTPS 599
S P S TP+T +P TP PST +PTPS
Sbjct: 278 SPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPS 309
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 465 AMYVAIQAVLSLYASVVPPVSCWTPATVSPTPCPSTKDTQSPTPS 599
+M AI++ S +A++ PV +P SP+P PS + SP+PS
Sbjct: 509 SMVGAIESRSSTHATIEDPVCEQSP---SPSPSPSPSPSPSPSPS 550
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPSTKDTQSPTPSCVWT*PVATSQTTS*RSSPNAA 665
PPV P TV+ +P P SP PS T P A QT S P+A+
Sbjct: 74 PPVITSPPPTVASSPPPPVV-IASPPPSTPATTPPAPPQTVSPPPPPDAS 122
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPST-KDTQSP-TPSCVWT*PVATSQTTS*RSSPNAAT 668
PP TP+T S TP P T T +P TP C P + T S S+P+ T
Sbjct: 75 PPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPT 127
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPST-KDTQSP-TPSCVWT*PVATSQTTS*RSSPNAAT 668
PP TP+T S TP P T T +P TP C P + T S S+P+ T
Sbjct: 75 PPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPT 127
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPST---KDTQSPTPSCVWT*PVATS 629
PP ++P T SP P P TQSP PS V+ PV S
Sbjct: 663 PPPVYYSPVTQSPPPPPPVYYPPVTQSPPPSPVYYPPVTQS 703
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCP--STKDTQSPTPSCVWT*PVATS 629
PP + P T SP P P T QSP P V+ PV S
Sbjct: 635 PPPVYYPPVTASPPPPPVYYTPVIQSPPPPPVYYSPVTQS 674
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPSTKD--TQSPTPSCVWT*PVATS 629
PP + P T SP P P TQSP P V+ PV S
Sbjct: 678 PPPVYYPPVTQSPPPSPVYYPPVTQSPPPPPVYYLPVTQS 717
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces
cerevisiae]
Length = 1252
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 493 SRCTRRSYHRYRAGLRRRCL-PHRAHLRRIRNPPRHPASG 609
S T +SY ++AG R R L P + L +R PPR PA+G
Sbjct: 594 STATSKSY-TFKAGDRVRFLGPSTSSLASLRAPPRGPATG 632
>At5g18270.2 68418.m02148 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 335
Score = 29.5 bits (63), Expect = 2.1
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 294 GIVTNW--DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 467
G TNW + +++YN + A +E V NP + MT+I E F
Sbjct: 135 GEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKNNPSTTTQPMTRIPVEDFTRMD 194
Query: 468 MYVAIQAVLSLYASVVPPVSCWTPATVSPTPCPSTKDTQSPT 593
I +L S +PP+ P+ +S T P+ K PT
Sbjct: 195 SLENIDHLLDF--SSLPPLI--DPSFMSQTEQPNFKPINPPT 232
>At5g18270.1 68418.m02147 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 335
Score = 29.5 bits (63), Expect = 2.1
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 294 GIVTNW--DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 467
G TNW + +++YN + A +E V NP + MT+I E F
Sbjct: 135 GEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKNNPSTTTQPMTRIPVEDFTRMD 194
Query: 468 MYVAIQAVLSLYASVVPPVSCWTPATVSPTPCPSTKDTQSPT 593
I +L S +PP+ P+ +S T P+ K PT
Sbjct: 195 SLENIDHLLDF--SSLPPLI--DPSFMSQTEQPNFKPINPPT 232
>At2g39480.1 68415.m04845 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1407
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +2
Query: 491 ALAVRVGRTTGIVLDSGDGVSHTVPIYEGYAIPHAILRLDLAGRDLTDYLMKIL 652
+L V G+T +V SG G S + + E Y P A L L GRDL Y ++ L
Sbjct: 1180 SLKVNGGQTVAVVGVSGSGKSTIISLIERYYDPVAGQVL-LDGRDLKSYNLRWL 1232
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Frame = +3
Query: 339 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 488
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 489 VLSLYAS 509
VL+LYA+
Sbjct: 241 VLALYAA 247
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Frame = +3
Query: 339 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 488
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 489 VLSLYAS 509
VL+LYA+
Sbjct: 241 VLALYAA 247
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 475 SPSKPCSRCTRRSYHRYRAGLRRRCL---PHRAHLRRI-RNPPRHPASGLSRS 621
SPS+ R +RRS R L RR L P R R + R+P R P +SRS
Sbjct: 522 SPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRS 574
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPSTKDTQSPTP 596
PP S TP SP P P + SPTP
Sbjct: 233 PPSSSPTPGPDSPLPSPGPPPSPSPTP 259
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 267 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 428
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 267 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 428
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 395 GSPQPQGQQREDDPDHVR---NIQHARHVRRHPSRAL 496
GSP+ +G + E+D D + NI+H + +H + A+
Sbjct: 91 GSPRVEGDEDEEDIDDIEYEFNIEHEQDKHKHSAEAM 127
>At1g66180.1 68414.m07512 aspartyl protease family protein contains
Pfam PF00026: Eukaryotic aspartyl protease profile;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) [Nicotiana tabacum]
Length = 430
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 322 SMSSQLVTIPCSMGYLRVRIPLFSVP 245
S+SS T+PCS + RIP F++P
Sbjct: 116 SLSSSFSTLPCSHPLCKPRIPDFTLP 141
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 507 SVVPPVSCWTPATVSPTPCP 566
S+ PP+SC TP PCP
Sbjct: 644 SIPPPLSCGTPVPSCQLPCP 663
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 432 TQIMFETFNTPAMYVAIQAVL-SLYASVVPPVSCWTPATVSPTPCPSTKDTQSPTPSCVW 608
T I+F +F+ + ++A S+Y PP C +P P P D Q PTP
Sbjct: 5 TIILFLSFSIIPLLTIVRADNHSVYCPPPPPCIC----ICNPGPPPPQPDPQPPTPPTFQ 60
Query: 609 T*PVATSQ 632
P A Q
Sbjct: 61 PAPPANDQ 68
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 194 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 72
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +1
Query: 472 TSPSKPCSRC-----TRRSYHRYRAGLRRRCLPHRAHLRRIRNPPRHPASGLSRSRPHRL 636
+SP KP SR Y R R R P R RR +PPR + R R H L
Sbjct: 551 SSPVKPKSRQGPPPPISSDYDRRRRS--DRSSPERQSSRRFTSPPRSSSRKSERDRHHDL 608
Query: 637 PHEDPHR 657
E R
Sbjct: 609 DSEHDRR 615
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 504 ASVVPPVSCWTPATVSPTPCPSTKDTQSPTP 596
A+ PPVS P T SP P + +P P
Sbjct: 42 AATPPPVSAPPPVTTSPPPVTTAPPPANPPP 72
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 504 ASVVPPVSCWTPATVSPTPCPSTKDTQSPTP 596
A+ PPVS P T SP P + +P P
Sbjct: 42 AATPPPVSAPPPVTTSPPPVTTAPPPANPPP 72
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 516 PPVSCWTPATVSPTPCPSTKDTQSPTPS 599
PP+ TP T +PTP S++ TQ PTPS
Sbjct: 648 PPMGAPTP-TQAPTP--SSETTQVPTPS 672
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,992
Number of Sequences: 28952
Number of extensions: 414074
Number of successful extensions: 1644
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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