Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0543.Seq
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   4.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.2  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.7  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   9.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   9.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.7  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 17 EEAPKVLHKQFNSPINL 67
          ++APK+++ ++NS +N+
Sbjct: 13 QKAPKIVNSKYNSILNI 29


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 17 EEAPKVLHKQFNSPINL 67
          ++APK+++ ++NS +N+
Sbjct: 13 QKAPKIVNSKYNSILNI 29


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 195 STHILIDALMLLSIYYAIFRSCKLFIC 275
           S  I+ D +MLL+ + A F    L+IC
Sbjct: 261 SNPIMWDRVMLLTFWSAFFIVNVLYIC 287


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 665 NLPSSASAPA 694
           NLPSSAS PA
Sbjct: 2   NLPSSASNPA 11


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 69  YRLIGELNCLCN 34
           Y ++  LNCLC+
Sbjct: 212 YHILAMLNCLCS 223


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 69  YRLIGELNCLCN 34
           Y ++  LNCLC+
Sbjct: 212 YHILAMLNCLCS 223


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 98  RQQTSPLPTNGHYGRPHVVKRQ 163
           R + SPL  NG+   PH+   Q
Sbjct: 94  RLEKSPLLANGYNHSPHLSHMQ 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,008
Number of Sequences: 336
Number of extensions: 2558
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)