Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0543.Seq
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    31   0.67 
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877...    29   4.7  

>05_01_0578 +
           5180538-5181385,5182480-5182595,5183397-5183605,
           5184024-5184143,5184247-5184375,5184466-5184591,
           5185550-5185667,5186471-5186680,5186788-5187100,
           5187467-5187560,5187760-5187868,5188322-5188593,
           5188684-5188811,5188977-5189211,5189794-5189982,
           5190069-5190349,5190431-5190698,5190719-5190961,
           5191598-5191680,5192484-5192493
          Length = 1366

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 8   VVGEEAPKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTN 127
           V G++ PK L+  F     L + +NI  S++   SP PTN
Sbjct: 746 VTGKDCPKGLYGTFCKACPLGTYKNITGSLKSLCSPCPTN 785


>04_04_0158 -
           23187070-23187264,23187347-23187477,23187550-23187763,
           23187834-23187932,23188034-23188156,23188247-23188366,
           23188447-23188506,23188592-23188884,23189554-23189707,
           23189813-23190130,23190668-23190798,23191001-23191586,
           23192125-23192739
          Length = 1012

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/88 (19%), Positives = 39/88 (44%)
 Frame = +3

Query: 9   WLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATM 188
           W  +  ++       ++ +    RTL+  SG  L   +  +      + RGK++ R +T+
Sbjct: 618 WKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTL 677

Query: 189 QQSTHILIDALMLLSIYYAIFRSCKLFI 272
           +  + +     +  S+ Y  ++S KL +
Sbjct: 678 RPKSLLNKKDALKRSVEYQRYKSLKLHV 705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,682
Number of Sequences: 37544
Number of extensions: 275906
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)