Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0543.Seq
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)              29   4.8  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.4  

>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 48  STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 185
           ST +S  T  RT+ + S ++ R+C++   T GR+   RGK   +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 281 AKLSVSFYEHEHVVDLLAEDLEPAPQTR*NNECAADRCLFHKKIN 415
           AKL+++   +E  V  L ++LE   +T  NN    D C F KK+N
Sbjct: 403 AKLNLTTTNYEEKVTTLEKELEELKRTGINNRNITDNC-FWKKVN 446


>SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = -2

Query: 325 IDDVFMLVKRHR*LGVKQINSLQDRKIA**IDKSIN---ASIRMCVDCCIVAFLVKDLPL 155
           +DDVF+LV   R +G+   +++    +   + K +N            C+ AF   D PL
Sbjct: 8   VDDVFLLVPEERYIGIPVPSNVSRSNVPLILAKILNFGRDESPFPAASCVNAFQDTDSPL 67

Query: 154 DNVRPSVMAVSWQRRSLLPDRVCNVL 77
            + R SV+     R + + D + ++L
Sbjct: 68  TDTRSSVIIFRKARMARVLDFISSLL 93


>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 526

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 6   EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLSGSKLRL 116
           EWL  +H R C   S  Q+   T+NRT+ T S  ++RL
Sbjct: 51  EWLVAKHERACHRASEFQAKTMTKNRTIWTPS-PRIRL 87


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 275 FHAKLSVSFYEHEHVVDLLAEDLEPAPQTR 364
           +HAKLS+     EHVV + A DL+ A   R
Sbjct: 690 YHAKLSLDAPVLEHVVQVTATDLDTANNGR 719


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,334
Number of Sequences: 59808
Number of extensions: 336723
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)