Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0543.Seq
         (701 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase...    25   2.3  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   4.0  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   5.3  

>U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 INAFINLLRYLSILQTIYLFHAKLSVS 298
           I   I   RYL+I+QT+ L HA+  +S
Sbjct: 20  IKDIIRQHRYLNIIQTVILPHAEWEMS 46


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 2    QRVVGEE-APKVL---HKQFNSPINLYSEQNIANSIRQQTSPLPT 124
            +R + E+ AP+V    H Q N   +LYS +N +   R +  P P+
Sbjct: 1085 RRELAEQGAPRVADNQHNQDNDRTSLYSARNTSEEQRGRRHPTPS 1129


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 81  TLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQST 200
           T   L G + R+C+    TDG    R   F  +A   ++T
Sbjct: 293 TSTALDGQRTRVCKCMHFTDGPDCDRCLPFYNDAPWGRAT 332


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,084
Number of Sequences: 2352
Number of extensions: 11242
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)