Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0543.Seq
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222966-1|BAD96686.1|  364|Homo sapiens PDZ and LIM domain 3 va...    36   0.14 
AF039018-1|AAB96665.1|  364|Homo sapiens actinin-associated LIM ...    36   0.14 
AF002280-1|AAC16670.1|  364|Homo sapiens alpha-actinin-2 associa...    36   0.14 

>AK222966-1|BAD96686.1|  364|Homo sapiens PDZ and LIM domain 3
           variant protein.
          Length = 364

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 29  KVLHKQFNSPINLYSEQNIANSIRQQTS 112
           K++H QFN+P+ LYS+ NI  +++ Q S
Sbjct: 184 KIVHAQFNTPMQLYSDDNIMETLQGQVS 211


>AF039018-1|AAB96665.1|  364|Homo sapiens actinin-associated LIM
           protein protein.
          Length = 364

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 29  KVLHKQFNSPINLYSEQNIANSIRQQTS 112
           K++H QFN+P+ LYS+ NI  +++ Q S
Sbjct: 184 KIVHAQFNTPMQLYSDDNIMETLQGQVS 211


>AF002280-1|AAC16670.1|  364|Homo sapiens alpha-actinin-2 associated
           LIM protein protein.
          Length = 364

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 29  KVLHKQFNSPINLYSEQNIANSIRQQTS 112
           K++H QFN+P+ LYS+ NI  +++ Q S
Sbjct: 184 KIVHAQFNTPMQLYSDDNIMETLQGQVS 211


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,107,201
Number of Sequences: 237096
Number of extensions: 1416526
Number of successful extensions: 2239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)