Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0543.Seq
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    34   0.10 
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp...    31   0.56 
At3g44200.1 68416.m04739 protein kinase family protein contains ...    31   0.98 
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   5.2  
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi...    28   6.9  

>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 530 TQTRLN-V*TRALTASAPPAN*TSCGVESNVFCRYDCVAPANRLNTNLPSSASAP 691
           TQTRL  V +  +  +APP+N        N+FC +    PAN  N+NL  S + P
Sbjct: 169 TQTRLGKVFSDIVAITAPPSNNNQTEASGNLFCPFS-PTPANVENSNLRFSTNDP 222


>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
           expressor of Pathogensis Related genes 5 (cpr5);
           regulator of disease resistance and senescence (Plant J.
           (2001)26(4)409-420.
          Length = 564

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 502 SILSTCPSSNTNTTKRVNACINRFRAPR*LNVLR 603
           S  ST  +SN+N+TKRV   ++R R P  L + R
Sbjct: 71  SYCSTSSTSNSNSTKRVTRVVHRLRNPMRLGMAR 104


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 23  APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 190
           AP  LH + +  +N +S+     S+  Q S L  N  +  PH V   V +  RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +3

Query: 153  SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFR 254
            S+ ++  ++A+M++   ++ D L LLSIYY++ R
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCR 2363


>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1030

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 563 MHAFTRLVVFVFEEGQVDKIL 501
           +H +T L+V+ F+E Q++K+L
Sbjct: 889 VHVYTSLIVYFFKEKQLEKVL 909


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,683
Number of Sequences: 28952
Number of extensions: 222975
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)