Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0541.Seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   0.27 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    29   0.83 
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   1.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   3.4  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   4.4  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   5.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.9  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 288  SAHYLFYSLIFMNVVPNLLIL-VPIFLFALLHAASYSLTILDTLGQNSLWVARL 446
            SA   +Y  I  ++VPN+  L  P  ++A   A +  LT   +LG + LW++R+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWISRV 2064


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +3

Query: 39  KRHPSLESSHHCQ*NRRSSLGGPRNHRAVYHWIR-VPVV*Q-SSVGILQSVT-RKRGDFS 209
           KR   ++     +  +    G PR++  +       P V + SS G+LQS   R +   S
Sbjct: 94  KRIREVKEKDRLESKKNERQGKPRSYNELLRQASSAPAVNETSSSGLLQSKDKRSQSPHS 153

Query: 210 AAATSKNSSTRDLPLRD 260
                KNSS+RD P+R+
Sbjct: 154 PKKPVKNSSSRDQPVRN 170


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 13  QQAGDTGPPKGIPALKAHIIANKID 87
           Q+ G  GP KG  A+K H I  +ID
Sbjct: 330 QRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 180 SVTRKRGDFSAAATSKNSSTRDLPLRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 344
           S+  K  D   A  +    T   P ++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 415 SLKAKTNDTLDAIKALIYKTYRSPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 546 PNNAMMSTTGNSTSRRAPRPGGCSATGTRPGR*ADEPPTTNS 421
           P  +  S T N+T +  P P   S T ++P     +P TT S
Sbjct: 228 PQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFHQPATTGS 269


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 318 FMNVVPNLLILVPIFLFALLHAASYSLTIL 407
           F+ V+PN+ +L+P F+   +  + Y L  +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 87  RSSLGGPRNHRAVYHWIR 140
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 159 SSVGILQSV-TRKRGDFSAAATSKNSSTRDLPLRDFMARFFLEDSAHYLFYSLIFMN 326
           SS G++  V TRK G+        NSS R++   D   R+ L +S     Y  IF N
Sbjct: 272 SSFGLVFVVYTRKNGE---NGLENNSSIREIKALDVEKRYVLYESLLEQSYDNIFFN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,990
Number of Sequences: 5004
Number of extensions: 55716
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)