Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0541.Seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 34 0.092
10_01_0313 + 3447065-3448204 29 3.5
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 29 3.5
12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691 29 4.6
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 29 4.6
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 6.0
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 28 8.0
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 28 8.0
07_03_0992 + 23180165-23180720,23180732-23181162 28 8.0
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 34.3 bits (75), Expect = 0.092
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = +3
Query: 222 SKNSSTRDLPLRDFMARFFLEDSAHYLFY-----SLIFMNVVPNLLILVPIFLFAL-LHA 383
+K S+ +P++D + F + ++ SL+ ++ + +L P+FL + +
Sbjct: 362 NKRSNEAAMPIKDDLRAIFFDYLTWFMVIYPRGVSLVLHSLPVAIFLLAPLFLTSPNITL 421
Query: 384 ASYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAALAEMCCSRSYSSWHCSATA 554
S+SLT+LD + L ++++V I AA A C R++ SW C A A
Sbjct: 422 MSWSLTVLDLMRGMLLHAFGAILAIV------IPAVAAAA--CALRAWVSWTCCAVA 470
>10_01_0313 + 3447065-3448204
Length = 379
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 130 IGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISL 252
+G+ FP +PV +F + A L H+ +P REI L
Sbjct: 80 LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGL 120
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 512 LFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTF 637
L+ VL L+G+ G P +YY ++ SR++P TR TF
Sbjct: 283 LYMTVLPDGLYGYVGSKPPQLYYTYLVDTNKSRKDP-TRVTF 323
>12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691
Length = 461
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 464 VPVAEHPPGRGARRDVLFPVVLIMALFG 547
V VA HP R VLFPVV +++ FG
Sbjct: 230 VIVAHHPNSLLHARSVLFPVVFVLSDFG 257
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 206 EVAAFASNAL*NADTGLLNNGNTYPMVHSTVITRTPQRATSILL 75
E A + N + DT +N+GNT P + T+ + TP + T L+
Sbjct: 961 EDIARSVNVVHVVDTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 282 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 383
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 488 GRGARRDVLFPVVLIMALFGHCGLMSPFVYYYF-VTWRYASRRNPYTRNTFRELRVAADG 664
GR R VV+ A+ G C L+S F Y F V A Y R TF EL G
Sbjct: 28 GRATRLYAGPAVVVSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAFLTG 87
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 214 RLHQRIPAREISLSGISWRGSSWRTARTIYSIHSFS*TSCPIC*YWCQSFYLRC 375
RL + P EI L+ +W G+ + T I CP C + + F C
Sbjct: 349 RLDPKEPLMEIDLNSSAWTGNWSQLCPTCKIIRPMRSKHCPTCKHCVEQFDHHC 402
>07_03_0992 + 23180165-23180720,23180732-23181162
Length = 328
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 509 HLGER-RGPEDVPRLELDQGDEQTSHPQRIL----TKSIKDSQG 393
H G R G E ++D GDE + P R++ T ++KDS+G
Sbjct: 75 HYGRRVTGYETPADYDMDDGDEVSFFPDRVMSLPVTLTVKDSKG 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,614,232
Number of Sequences: 37544
Number of extensions: 425966
Number of successful extensions: 1390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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