Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0541.Seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    54   1e-07
U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    34   0.11 
AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm rece...    31   1.0  
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    28   5.4  
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine re...    27   9.5  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/83 (32%), Positives = 45/83 (54%)
 Frame = +3

Query: 261 FMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVA 440
           F+ R  +EDS HYL YS++F+   P  +  +P+ ++A LHA ++   IL   G  S  + 
Sbjct: 108 FIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHACTFMTKILRETGHTSSIIP 167

Query: 441 RLLISLVEFQSRNILRAAALAEM 509
           + L      Q++N L   A +E+
Sbjct: 168 K-LEQFTAHQTQNALGIIACSEI 189



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +1

Query: 34  PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKALLANAATS 207
           PP    ++  ++ AN ++  L+  RV+TV   + Y+ P     P  SA+YK   A+AAT 
Sbjct: 31  PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90

Query: 208 ALRLHQRI 231
           ALRLH RI
Sbjct: 91  ALRLHTRI 98



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/46 (45%), Positives = 30/46 (65%)
 Frame = +2

Query: 512 LFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTFRELR 649
           L P+++ +   G   L+ PF YY F++ RYASRRNP TR  F ++R
Sbjct: 191 LVPLLVSLIFSGKGSLLLPFAYYRFLSLRYASRRNPSTRQAFAQMR 236


>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +3

Query: 285 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVE 464
           D    +F  L    ++P + +  P+ LFA+L      +  L  L   SL V  ++  ++ 
Sbjct: 246 DVNRQIFKMLCMQTIIPMITMYTPVALFAILLLFGQDIPYLGNLTSCSLAVYPVIEPIIA 305

Query: 465 FQSRNILRAAALAEMCCSRSYS 530
               +  R A +  + CS S S
Sbjct: 306 MTCISAFRRATINAVTCSHSVS 327


>AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 247 protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +3

Query: 300 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSRN 479
           LFY+L+F  ++P +L+ +P     L+     S+ +   L   S+++  +L  L  F    
Sbjct: 245 LFYALVFQTLIPVILMHIPASFGFLVSIFGNSIQLFGQLPTFSIFLFPMLDPLPNFFIIR 304

Query: 480 ILRAAALAEMCCSRSYSSWH 539
             R A      C  S +S H
Sbjct: 305 SYRQAITEFFGCILSTTSSH 324


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 338 FVNIGANLFICAATRCFVFLDYP*YSWSE 424
           FV++G ++FI  A   F+F D P  SW+E
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +3

Query: 300 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSRN 479
           LFY+L+F  ++P +L+ +P  L  L      S+     L   S+++  +L  L  F    
Sbjct: 260 LFYALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFLYPILDPLPNFFIIR 319

Query: 480 ILRAAALAEMCC 515
             R A L    C
Sbjct: 320 SYRQAILDFFGC 331


>AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical
           protein W06D4.2 protein.
          Length = 290

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 225 KNSSTRDLPLRD--FMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSL 398
           KNSS  D   R   F +  F    + YLF   + +++ P  + L P F+FALL       
Sbjct: 135 KNSSLDDTERRSILFSSTLFFGIFSGYLFGPRM-LSLAPTTIFLPP-FMFALLFDNGILP 192

Query: 399 TILDTLGQNSLWVARLLISL 458
           T L +L + S ++A   IS+
Sbjct: 193 TPLVSLNRQSFFIAFASISV 212


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 LDTCSRCLTIQCRHSTKRYSQTRRL 205
           L +CS CL  Q R    RY QT++L
Sbjct: 392 LVSCSNCLDYQSRRLKVRYGQTKKL 416


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 306 YSLIFMNVVPNLLILVPIFLFALL--HAASYSLTILDTLGQ-NSLWVARLLISLVEFQSR 476
           + L F+++  NLLI +P+F FA     ++ Y +   + +     L+VA    SL     R
Sbjct: 12  FCLSFVSICLNLLIFIPVFRFAFFGKRSSIYLIAFFNIISDLQQLFVACFHSSLSIIFGR 71

Query: 477 NILRAAAL 500
            +L  A +
Sbjct: 72  YVLSGARI 79


>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
           protein H05G16.1 protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 564 LIKPQWPNNAMMSTTGNSTSRRAPRPGGCSATGTRPGR 451
           L+KP+  +N    ++G  +SR +P  G   A G  PGR
Sbjct: 692 LMKPKVISNDHEPSSGTHSSRVSPESGTYGALGPLPGR 729


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 300 LFYSLIFMNVVPNLLILVP 356
           LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257


>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 300 LFYSLIFMNVVPNLLILVPIFLFAL 374
           LFYSL+   ++P +L+ +PI ++ L
Sbjct: 241 LFYSLVLQTLIPFVLMHIPITIYYL 265


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 122 CVPLDTCSRCLTIQCRHSTKRYSQTRRLQRCGYIKE 229
           C PLDT  R + +Q     K+Y+ T+   +  Y K+
Sbjct: 230 CYPLDTVRRSMMMQSGKQIKQYTSTKDCWKTLYKKD 265


>AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine
           receptor, class n protein1 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASY 392
           ++  +L    +F N++P ++I  P+FL A     SY
Sbjct: 247 ETHRHLTLLALFQNLIPAVVIAFPVFLVAFSFVMSY 282


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 507 SRRAPRPGGCSATGTRPGR*ADEPPTTN 424
           S ++PRPGG S +  R G  A++P + N
Sbjct: 832 SSKSPRPGGPSTSSHRHGSHANDPRSHN 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,046
Number of Sequences: 27780
Number of extensions: 326834
Number of successful extensions: 1197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)