Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0541.Seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.51 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.3  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 297 YLFYSLIFMNVVPNLLILVPIF 362
           +LF  LIF++V  N+L+ V I+
Sbjct: 30  FLFLILIFLSVAGNILVCVAIY 51


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 90  SSLGGPRNHRAVYH 131
           SSL   RNH+++YH
Sbjct: 43  SSLNSLRNHKSIYH 56


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 168 GILQSVTRKRGDFSAAATSKNSS 236
           G+ +SV+ +RG  + + TSK S+
Sbjct: 390 GVNESVSYERGSMTVSVTSKPST 412


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 309 SLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISL 458
           S+I   V+ N+L+ V +FL   L      L +  +L  + L VA L++ +
Sbjct: 50  SIIVGTVIGNILVCVAVFLVRKLRRPCNYLLV--SLAVSDLCVALLVMPM 97


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 256 GISWRGSSWRTARTIYSIHSFS 321
           G +W   SWR  R  Y +H F+
Sbjct: 170 GSAW---SWREERQAYYLHQFA 188


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 256 GISWRGSSWRTARTIYSIHSFS 321
           G +W   SWR  R  Y +H F+
Sbjct: 170 GSAW---SWREERQAYYLHQFA 188


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 81  FIGNDVSFQGWDAFWWTSVACLLI 10
           F  ND+ +QG     WT  +   I
Sbjct: 285 FQANDIQYQGASDILWTQASAKAI 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,022
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)