Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0541.Seq
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar... 30 1.3
At5g57310.1 68418.m07159 hypothetical protein 29 2.9
At5g04770.1 68418.m00492 amino acid permease family protein simi... 29 3.8
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At5g19880.1 68418.m02366 peroxidase, putative similar to peroxid... 28 6.7
At3g11620.3 68416.m01421 expressed protein similar to unknown pr... 28 6.7
At3g11620.2 68416.m01420 expressed protein similar to unknown pr... 28 6.7
At3g11620.1 68416.m01419 expressed protein similar to unknown pr... 28 6.7
At3g61420.1 68416.m06879 transcription factor-related low simila... 27 8.8
>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar
to class I chitinase GI:7798656 from [Halimolobos
perplexa var. perplexa]; contains Pfam profile PF00182:
Chitinase class I; identical to cDNA chitinase-like
protein 1 (CTL1) CTL1-ELP1 allele GI:17226328
Length = 321
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 75 GNDVSFQGWDAFWWTSVAC 19
GN V QGW+ WW+ C
Sbjct: 38 GNKVCTQGWECSWWSKYCC 56
>At5g57310.1 68418.m07159 hypothetical protein
Length = 102
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 137 TCSRCLTIQCRHSTKRYSQTRRLQRCGYIKEFQHERSPS 253
TC C T +CR TK++ RR + YI + S S
Sbjct: 4 TCCSCQTRRCREPTKKFDGGRRNESNRYILGMRERDSDS 42
>At5g04770.1 68418.m00492 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 583
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 488 GRGARRDVLFPVVLIMALFGHCGLMSPFVYYYF-VTWRYASRRNPYTRNTFRE 643
GR +R D +V+ A+ G C L+S F Y F V A Y R TF E
Sbjct: 84 GRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITFGE 136
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 113 SPCCVPLDTCSRCLTIQCRHSTKRYSQTRRL 205
+PCC L TC RC + HS R T+ +
Sbjct: 32 APCCDKLFTCIRCHDEEADHSVDRKQITKMM 62
>At5g19880.1 68418.m02366 peroxidase, putative similar to peroxidase
[Lycopersicon esculentum] gi|296910|emb|CAA50597
Length = 329
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 342 LILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAA 497
L+L+PI +F +L A + T N +AR L+E SRN +R A
Sbjct: 9 LVLLPILMFGVLSNAQLTSDFYSTTCPNVTAIAR---GLIERASRNDVRLTA 57
>At3g11620.3 68416.m01421 expressed protein similar to unknown
protein GB:AAF00672 (Arabidopsis thaliana)
Length = 239
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 170 HSTKRYSQTRRLQRCGYIKEFQHERSPSPGFHGEVLPGGQRALSILFTHFHERRAQFVNI 349
+ TKR+ ++R + G + E ++ +P FH +PG +S + F E +F +
Sbjct: 9 NETKRHVKSRLCRVSGSMTEMMEIQAENPTFHVLFIPGNPGVVS-FYKDFLESLYEF--L 65
Query: 350 GANLFICA 373
G N + A
Sbjct: 66 GGNASVIA 73
>At3g11620.2 68416.m01420 expressed protein similar to unknown
protein GB:AAF00672 (Arabidopsis thaliana)
Length = 312
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 170 HSTKRYSQTRRLQRCGYIKEFQHERSPSPGFHGEVLPGGQRALSILFTHFHERRAQFVNI 349
+ TKR+ ++R + G + E ++ +P FH +PG +S + F E +F +
Sbjct: 9 NETKRHVKSRLCRVSGSMTEMMEIQAENPTFHVLFIPGNPGVVS-FYKDFLESLYEF--L 65
Query: 350 GANLFICA 373
G N + A
Sbjct: 66 GGNASVIA 73
>At3g11620.1 68416.m01419 expressed protein similar to unknown
protein GB:AAF00672 (Arabidopsis thaliana)
Length = 312
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 170 HSTKRYSQTRRLQRCGYIKEFQHERSPSPGFHGEVLPGGQRALSILFTHFHERRAQFVNI 349
+ TKR+ ++R + G + E ++ +P FH +PG +S + F E +F +
Sbjct: 9 NETKRHVKSRLCRVSGSMTEMMEIQAENPTFHVLFIPGNPGVVS-FYKDFLESLYEF--L 65
Query: 350 GANLFICA 373
G N + A
Sbjct: 66 GGNASVIA 73
>At3g61420.1 68416.m06879 transcription factor-related low
similarity to SP|Q9DBA9 TFIIH basal transcription factor
complex p62 subunit {Mus musculus}; contains Pfam
profile PF03909: BSD domain
Length = 566
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 681 QGRCVS-PSAATRSSRNVLRVYGFRRDAYLHVTK**YTNGLIKPQ 550
QG +S P A S RNV YG +++ L + ++ LIKP+
Sbjct: 383 QGNILSEPRGAKASKRNVHEAYGLLKESILVIRMTGLSDPLIKPE 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,345
Number of Sequences: 28952
Number of extensions: 304131
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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