Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0540.Seq
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 92  VTLKSGSRRPPCWRSTTPRFWAGWVAAENTSS-KPASDGAMA 214
           VT K  + +P CWR             + +S+ +PAS G  A
Sbjct: 874 VTCKCENGKPTCWRECDKATCEKLFRMKKSSALRPASGGTTA 915


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 19  MGLANTGHPEA 51
           MGLA TGHP A
Sbjct: 112 MGLAPTGHPGA 122


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 19 MGLANTGHPEA 51
          MGLA TGHP A
Sbjct: 4  MGLAPTGHPGA 14


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +2

Query: 143 PRFWAGWVAAENTSSKPAS 199
           P  W  WV     S +P+S
Sbjct: 187 PMLWPAWVYCTRYSDRPSS 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,077
Number of Sequences: 336
Number of extensions: 1925
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)