Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0540.Seq
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   3.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   3.5  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.0  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 67  ELATKWVRSNFEVWKQKAAMLEKYDAT 147
           EL T  V + FE W+Q     E+YD T
Sbjct: 757 ELRTNVVNNVFENWRQTGIFWEQYDPT 783


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 143 ASYFSSMAAFCFQTSKL 93
           A YFS +A FCF+  KL
Sbjct: 685 AVYFSKVACFCFEEQKL 701


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 143 ASYFSSMAAFCFQTSKL 93
           A YFS +A FCF+  KL
Sbjct: 685 AVYFSKVACFCFEEQKL 701


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 160 ARPESWRRTSPAWRPSASRLQ 98
           A PE W + SP W+    R Q
Sbjct: 13  ASPEQWEKWSPRWKSIVFRTQ 33


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 465  FI*YCYNTSLDFSNII-LIVHGNFFSLSVAICEKIV 569
            F+  C+N  LD SNI   IV  + F+ ++ + E I+
Sbjct: 1649 FVILCFNAFLDVSNIFPAIVRVDLFATAMHVYEVIM 1684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,407
Number of Sequences: 5004
Number of extensions: 29712
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)