Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0540.Seq
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330...    54   6e-08
01_05_0654 + 23965868-23967718                                         31   0.66 
07_01_0507 + 3777505-3777762,3780286-3780390,3780740-3780796,378...    30   1.2  

>10_08_0657 -
           19632363-19632494,19632587-19632864,19632964-19633084,
           19634337-19634438,19634510-19634622,19635000-19635373,
           19635663-19635688,19636048-19636261,19636343-19636460,
           19636930-19637017,19637113-19637280,19637559-19637631,
           19637796-19637902,19638057-19638094,19638190-19638305,
           19638579-19638698,19639498-19640000
          Length = 896

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = +1

Query: 1   LQYIVIMGLANTGHPEAMRYATELATKWVRSNFEVWKQKAAMLEKYDATIXXXXXXXXEY 180
           LQ++++ GL  +G  EA   A ++AT+WVR+N++ +K   AM EKYD           EY
Sbjct: 453 LQHLIVEGLLRSGSGEARELAEDIATRWVRTNYDAYKATGAMHEKYDVVTCGKSGGGGEY 512

Query: 181 VVQ 189
             Q
Sbjct: 513 KPQ 515


>01_05_0654 + 23965868-23967718
          Length = 616

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 10  IVIMGLANTG-HPEAMRYATELATKWVRSNFEVWKQKAAMLEKYDATIXXXXXXXXEYVV 186
           ++I GL+  G HPE M    ++       +  ++   AA+L    A            +V
Sbjct: 521 LLISGLSRNGMHPEVMNLCCKMQEVEPAPSPTIFS--AALLAVKSAASVQYGKAMHACIV 578

Query: 187 QTGFGWSNGVVMSLLNRYGADN 252
           + G   S  VV SLLN YG+ N
Sbjct: 579 KKGLLLSKSVVQSLLNMYGSFN 600


>07_01_0507 +
           3777505-3777762,3780286-3780390,3780740-3780796,
           3781534-3781863
          Length = 249

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 160 ARPESWRRTSPAWRPSASRLQSYFAP 83
           A PE WR   P+W+ +   ++ YF P
Sbjct: 141 AAPEYWRNLDPSWKHTGPPMRRYFHP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,772
Number of Sequences: 37544
Number of extensions: 213683
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)