Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0540.Seq
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   2e-14
SB_48436| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)             27   8.4  

>SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/82 (43%), Positives = 47/82 (57%)
 Frame = +1

Query: 1   LQYIVIMGLANTGHPEAMRYATELATKWVRSNFEVWKQKAAMLEKYDATIXXXXXXXXEY 180
           LQ I I  +A++   E  R A  LA KWV +N++ WK    M EK++A I        EY
Sbjct: 282 LQDIAIDAMADSKSDEVKRSAFILAQKWVNTNYKAWKATGHMFEKFNADIQGAPGGGGEY 341

Query: 181 VVQTGFGWSNGVVMSLLNRYGA 246
            +Q GFGWSNGV + +L  YGA
Sbjct: 342 DIQVGFGWSNGVALQILQTYGA 363


>SB_48436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  ANTGHPEAMRYATELATKWVRSNFEVWKQKA 120
           A  GHP  + +AT+    W + +F+VW Q A
Sbjct: 174 AKWGHPIDLHFATKGLKGWPKFHFQVWHQDA 204


>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
          Length = 782

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 293 PGAVDSARFRRRSKLSAPYLFRSDITTPLLHPK 195
           PG +D   FRRRSK SAP    +D   P   P+
Sbjct: 741 PG-IDRVPFRRRSKDSAPAKVHADGAAPAPSPR 772


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,338
Number of Sequences: 59808
Number of extensions: 234997
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)