Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0539.Seq
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 32 0.085
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.34
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 29 0.45
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 2.4
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 27 2.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 5.6
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 7.4
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 7.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.4
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 9.7
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 9.7
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 31.9 bits (69), Expect = 0.085
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 370 LVLIFMISVFGVKNNGNIVFVIMLTLLQGLCG-MCFGFVI 486
+V +F I++FGVK G + F++ + +CG + G +I
Sbjct: 203 IVFLFFINIFGVKGYGEMEFIMSTIKVVAMCGFIILGIII 242
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -1
Query: 492 GRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDL 313
G++H+ + HA ++S EDD D ++HE + + R HHE G+ + +
Sbjct: 154 GKHHKGK-HAKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAHHEPGEHMPPPPM 212
Query: 312 SGRHSRH 292
+ H
Sbjct: 213 HHKPGEH 219
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 241 IVSVDVERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMCG 360
+V + V+RME + R G SP + S +T+F +M G
Sbjct: 195 LVRIKVQRMEVSIIRRETIGTSPNQYSNSETITRFQIMDG 234
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 89 LLETCDYNPKLGDIPIDFMDPIYGNKNPSFTDFVAPGVILTIV 217
L+ T N +L + PIDF +YG K D GV + +V
Sbjct: 365 LVLTATTNTELLEEPIDFWSDVYGFKMNGMKDASYKGVSVQVV 407
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 104 DYNPKLGDIPIDFMDPIYGNKNPSFTDFV 190
++N +G++PI F+D +YG D +
Sbjct: 196 EHNYTIGEVPIAFVDRLYGESKLGMDDIL 224
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 2 QVWLDMSNQQIGLMLNRDIQFSYRDFAK 85
Q+W+D I L NR Q SY DF +
Sbjct: 135 QLWIDRIEPIIKLYPNRFSQVSYEDFLR 162
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 247 SVDVERMEGLLDRSWVAGVS 306
SVD + ++G D+ W+ GVS
Sbjct: 1277 SVDRDMLKGTKDKQWIEGVS 1296
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 608 VPLPAPHPGHELAAVHPD 661
VP+P P PGH+ A V D
Sbjct: 369 VPVPEPLPGHQWAEVKHD 386
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 518 PAGPGFVLPHAAAERGDLAHRRDALDPALRVPLPAPHPGHELAAVH 655
P P P AAA +A A A+ VP PAP P AA H
Sbjct: 366 PPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAEH 411
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 489 GRLRARANAIQLALGSFYPTLLLSGVIWPIEGMPWILRYVSLCLPLTLA 635
GRL+ + + F L+L GV++ I W+ +VS +P+T A
Sbjct: 76 GRLQMSSQYKAFLISLF--ALILPGVLFFIFSAFWLWHHVSPAVPITFA 122
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/75 (22%), Positives = 30/75 (40%)
Frame = -1
Query: 486 YHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSG 307
++EPE H ++S+H+ + I + H + S ++GD+ E LS
Sbjct: 191 HNEPEYHTESKNEESEHNTKS---IREEPIHHVDSKNEEPVYSKIPEKMGDEFSENSLSK 247
Query: 306 RHSRHPGSVQETLHP 262
S +HP
Sbjct: 248 SDSAVKQEGNLLIHP 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,249
Number of Sequences: 5004
Number of extensions: 53304
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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