Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0539.Seq
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 33 0.27
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 31 0.82
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 29 2.5
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 29 2.5
06_03_0767 - 24436161-24436460 29 2.5
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 29 2.5
03_02_0698 - 10496316-10498127,10498539-10498559 29 2.5
03_01_0221 + 1752500-1752868,1753301-1753436,1753850-1753989,175... 29 2.5
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 4.4
08_01_0397 - 3509186-3510291,3510322-3512335 29 4.4
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 29 4.4
03_05_0301 + 22928864-22929787 29 4.4
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 29 4.4
02_02_0310 - 8842286-8843314 29 4.4
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 28 5.8
12_02_0885 + 23994354-23994584,23994987-23995342,23995549-239956... 28 7.6
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 7.6
02_01_0586 - 4334896-4335177,4336340-4338007 28 7.6
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 405 DAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQET 271
+ E RY ED+ R H + D+ + +G+H R G +ET
Sbjct: 505 EGERRYREDDGHGRSDRHKRDESDNRKRSPDTGKHRREDGGHRET 549
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 474 EAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVR 325
E HA L SQH D+PI+ + D QR+ H L D++R
Sbjct: 181 EDHATDVLSMSQHIPGLDIPILQLGDIVISIDTAQRQAEERGHTLHDEIR 230
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Frame = -1
Query: 531 PGPAGSRSL*LASGRYHEPEA--HAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLS 358
P + SR ++ HEPE+ A T Q P++ + R H+DEH++
Sbjct: 107 PTHSSSRDETKSNHTAHEPESGGDADDTKGDRQSQRVPKSPLLTREKERKHKDEHRKSYP 166
Query: 357 AHHHELGDDVR---EQDLSGRHSRHPGSVQETLHPFHVNADDVRATARKNT 214
H R S H+RH ++T A+ RA+ R+++
Sbjct: 167 KDSHSKEQSRRSPSRHHSSQDHARHHSRSRDT----GAEANGSRASTREDS 213
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 492 GRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 343
G ++EP A S + D +L A H +HQ+ + HHH+
Sbjct: 69 GAFYEPPARNLGLQLMSSVPADRDTKHLLSATPFLHHHQHQQYVPHHHHQ 118
>06_03_0767 - 24436161-24436460
Length = 99
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 492 RLRARANAIQLALGSFYPTLLLSGVIWPIEGMPWILR 602
++ A + +A+ S LLLS ++W ++G WILR
Sbjct: 52 KVAAGGESRAVAVASSLRRLLLSRLVWKLQGGDWILR 88
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 68 YRDF-AKGLLETCDYNPKLGDIPIDFMDPIYGNKNPS 175
YRD + +L DYNPKL D + + P G+K+ S
Sbjct: 214 YRDLKSPNILLDKDYNPKLSDFGLAKLGPFEGDKHVS 250
>03_02_0698 - 10496316-10498127,10498539-10498559
Length = 610
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 319 LFSHVVTQFVVMCGQTALVLIFMISVFGVKNNGNIVFVIMLTLLQGLCGMCFG 477
++ H T F+++C A LIF ++ V ++ V+ + +L GLCG +G
Sbjct: 407 MYVHAFT-FILLC--VAPFLIFSVTALNVHDDDIRDTVVSVGVLLGLCGFLYG 456
>03_01_0221 +
1752500-1752868,1753301-1753436,1753850-1753989,
1754083-1754206,1754960-1755363
Length = 390
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 59 QFSYRDF-AKGLLETCDYNPKLGDIPIDFMDPIYGNKN 169
Q YRDF A +L DY PKL D + P+ G +
Sbjct: 200 QIIYRDFKASNILLDVDYTPKLSDFGLAKNGPVAGRSH 237
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +2
Query: 509 ERDPAGPGFVLPHAAAERGDLAHRRDALDPALRVPLPAPHPGHE 640
E AGPG V AAAE G +A +PAL V + A P E
Sbjct: 77 EAPAAGPGDVAA-AAAESGPVAMEAGDGEPALEVAITAHEPVEE 119
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 444 SQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHH--ELGDDVREQDLSGRHSRH 292
S+H D + R+H D + R S+ HH E DD R++D R RH
Sbjct: 10 SKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRD-RDRERRH 61
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 318 PVLARRHPVRGDVRTDGAGAHLHDIG 395
P A + P DVR +G GA+LHD G
Sbjct: 81 PAAAEKAPEE-DVRAEGEGAYLHDAG 105
>03_05_0301 + 22928864-22929787
Length = 307
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 396 HRYHEDEHQRRLSAHHHELGDDVREQD-LSGRHSRH 292
H +H HQ+ ++A H L + R+QD L R + H
Sbjct: 178 HPHHHHHHQQMVNAQHMALVEVARDQDMLRARQAGH 213
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 116 KLGDIPIDFMDPIYGNKNPSFTDFVAPGVILTIVFFLAVALTSSALTWNGWRVSW 280
KLG + I D +YGN + FV G IV L + S GWR+ W
Sbjct: 231 KLGILVIT--DEVYGNLVFGSSPFVPMGCFGHIVPILTIGSLSKRWIVPGWRLGW 283
>02_02_0310 - 8842286-8843314
Length = 342
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = -1
Query: 486 YHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSG 307
+H H ++ +H+ D+ ++ +H +RR HHHE + RE+
Sbjct: 190 HHRHHHHHHDENEEDEHEQADEASPAVERLISFH----RRRHHHHHHEDDHEQREEGAPM 245
Query: 306 RHSRHPGSVQE 274
+ RH +E
Sbjct: 246 KRFRHHHEEEE 256
>01_05_0199 - 19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDA---EHRYHEDEHQRRLSAHHHELGDDVR-- 325
R E E + +S+ D D + D+ + + E + +++ HHH+ DDV
Sbjct: 775 RDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRHHHDTADDVSSE 834
Query: 324 --EQDLSGRHSRHPGSVQETLHPFHVNADD 241
E+D S + RH +++ H + D
Sbjct: 835 RDEKDDSKKSRRHSSDRKKSRKHTHASDSD 864
>12_02_0885 +
23994354-23994584,23994987-23995342,23995549-23995663,
23995918-23995962,23996151-23996333,23996802-23996978,
23997345-23997476,23997587-23997766,23999116-23999247,
24000212-24000280,24000377-24000490,24000579-24000806,
24001343-24001486
Length = 701
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -1
Query: 447 QSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQ 277
QS+ + EDD + + H HQ++ H + DD + D R H V+
Sbjct: 26 QSEEEEEDDDEAVDFVDEDDHPHPHQQQQQLRHQVVDDD-DDDDAHARSGYHSEEVE 81
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 405 DAEHRYHEDEHQRRLSAHHHELGDDV 328
D H YH HQRR HHH DV
Sbjct: 552 DHHHHYHGGHHQRR--RHHHPPAWDV 575
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 119 LGDIPIDFMDPIYGNKNPSFTDFVAPGVILTIVFFLAVALTSSALTW 259
L + + + +PI N +PS T AP + + +L + +S + W
Sbjct: 64 LRSLHLKYAEPISPNPSPSPTSAAAPAALNAVKLYLHIGGSSPSARW 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,836
Number of Sequences: 37544
Number of extensions: 415330
Number of successful extensions: 1751
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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