Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0539.Seq
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 2.6
SB_51130| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.6) 29 3.4
SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 3.4
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 29 4.5
SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4) 29 4.5
SB_32857| Best HMM Match : TolA (HMM E-Value=1.1) 29 4.5
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_25830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 4.5
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 28 5.9
SB_46992| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 28 5.9
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 5.9
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 28 5.9
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 7.8
SB_25713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -1
Query: 483 HEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELG 337
H P + + S D DD PI D E EDE + A+HHE G
Sbjct: 28 HGPAGRSLSRKETSGKDGGDDTPIEDDIEEEEIEDEDEGSAKANHHESG 76
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 411 ILDAEHRYHEDEHQRRLSAHHHELGDDVREQDL 313
I AEH+ E E QR+L H + + RE+DL
Sbjct: 408 IKKAEHKAVESEKQRKLENEKHSMELEAREKDL 440
>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -1
Query: 510 SL*LASGRYHE---PEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHEL 340
+L L G Y E PE AA HD++DD D + H+D+H HHH+
Sbjct: 74 TLRLLMGIYMEHGIPEVMAAAD-DDDDHDDDDDDDHDDDHDDDDHDDDH------HHHDD 126
Query: 339 GDDVREQD 316
DD + D
Sbjct: 127 DDDDHDDD 134
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 396 HRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGS 283
H YHED+H S+ G+ + +QD+S S PG+
Sbjct: 806 HSYHEDQHAEHSSSSKQGGGEGLHKQDVSQTPS-FPGN 842
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 435 DNEDDVPIILDAEHRYHEDEHQRRLSAHHHELG-DDVREQ 319
DN+ DV + D+ H YH + S HHHE DD E+
Sbjct: 648 DNDGDVNVNDDSRHNYHYTQK----SKHHHEKNIDDSNEK 683
>SB_51130| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.6)
Length = 288
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/88 (17%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHD-NEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDL 313
+ H+ +H ++ H + D+P ++ H+Y + + +++ H D+R + +
Sbjct: 27 KLHQYSSHDIRSKVNGLHQYSSHDIPSKVNKLHQYSSHDIRSKVNGLHQYSSHDIRSK-V 85
Query: 312 SGRHSRHPGSVQETLHPFH-VNADDVRA 232
+G H +++ ++ H ++ D+R+
Sbjct: 86 NGLHQYSSHNIRSKVNKLHQYSSHDIRS 113
>SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 638
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 87 VCWRLATTTRSWATSRLTSWTPYTGIRTLRSQT 185
V W +T SW SR +++ P+ G+R + Q+
Sbjct: 208 VLWSDSTIVLSWLRSRSSAFKPFVGVRIVEIQS 240
>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1751
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 179 TDFVAPGVILTIVFFLAVALTSSALTWNGWRVSWT 283
TD PG ++V +A+ S +TW G+++S+T
Sbjct: 837 TDSSLPGGAPSLVSVVAMTSKSMQVTWKGYKISYT 871
>SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = -1
Query: 201 TPGATKSVNEGFLFPYMGSMKSIGMS-PSFGL*SQVSSRP-----LAKSLYENCMSRLSI 40
TP + G P G+M S+GMS P G S+V S P + ++ N R+ I
Sbjct: 316 TPVQANITSPGMSTPVQGNMTSLGMSTPVQGAESKVKSPPENTERIPVKVFANRNYRIRI 375
Query: 39 SPICWLDMSS 10
+ + W M++
Sbjct: 376 ARLIWEGMAN 385
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 465 HVLRVRDIGRLRARANAIQLALGSFYPTLLLSGVIWPIEGMPWILRYVSLCLPL 626
++L V + R + + + L L S + L+L GV+ + ILR+ S+ P+
Sbjct: 578 YILIVNQLARKNSMPSPVDLVLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPM 631
>SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)
Length = 177
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 417 PIILDAEHRYHEDEHQRRLSAHHH 346
P L+ H YH+ +HQ HHH
Sbjct: 67 PNCLEMTHLYHDQQHQWNHQHHHH 90
>SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)
Length = 448
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -1
Query: 387 HEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQETLH 265
HED H + H + D+ R + RH + +E H
Sbjct: 140 HEDRHDEERNDEHEDRHDEERNNEHEDRHDEERNNEEEDRH 180
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Frame = -1
Query: 351 HH--ELGDDVREQDLSGRHSRHPGSV-QETLHPFHVNAD-----DVRATARKNTMVNMTP 196
HH + D+R ++ RHPGSV Q+ H +N D V R VN
Sbjct: 205 HHPCSVNQDIRHPGSVNQNIRHPGSVNQDIRHAVSINQDICHAGSVNQDIRHAVFVNQNI 264
Query: 195 GATKSVNEGFLFPYMGSMK-SIGMSPS 118
SVN+ S+K S+ PS
Sbjct: 265 NHACSVNKKTSVTQFPSIKTSVTQVPS 291
>SB_25830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -1
Query: 399 EHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQETLHPFHVNADDVRATARK 220
E+R ED +R H +S H+ HPG E +H ++ + + RK
Sbjct: 137 ENRCDEDLKPKREQRDHEMYSSCCYSNTVSTYHALHPGHAWERVHFLNLRSVYEKVQCRK 196
Query: 219 N 217
N
Sbjct: 197 N 197
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 399 EHRYHEDEHQRRLSAHHHELGDDVRE 322
+HR H EH RR H G+D +E
Sbjct: 849 KHRKHSREHSRRRHQRKHHKGNDAQE 874
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 408 LDAEHRYHEDEHQRRLSAHHHELGDDVRE 322
LD + ++H+D HQ + HE+ D+ E
Sbjct: 58 LDVDRKFHDDSHQLKYFCPPHEIHFDLSE 86
>SB_46992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 151 GVHEVNRDVAQLRVVVASLQQTLSEVPVRELYVPV 47
GV++ N D QLR ++ S Q P++ LY PV
Sbjct: 81 GVYKYNNDYEQLRPLLLSRPQPALLRPLKPLYSPV 115
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 248 ALTWNGWRVSWTDPG 292
AL W G R+ WTDPG
Sbjct: 142 ALDWKGRRLFWTDPG 156
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/91 (23%), Positives = 32/91 (35%)
Frame = -2
Query: 560 AQQQRGVERTQGQLDRVRSSSQAADITNPKHMPHRPCSKVSMITKTMFPLFLTPNTDIMK 381
++ Q G T L +S+ P H P + + +T P TP T +
Sbjct: 1739 SRAQEGQIPTLSTLKTTSTSTSTTKYIPPPHSPPTTTTTTTTTPETTAPRTTTPETTTPE 1798
Query: 380 MSTSAVCPHITTNWVTTCENRISPGDTPATQ 288
+T TT TT +P T A +
Sbjct: 1799 TTTPRTTTPETTKPRTTTPKTTTPKKTTAAK 1829
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 218 FFLAVALTSSALTWNGWRVSWTDPGWRECLP 310
F +A LT L G +V WTDPG R C+P
Sbjct: 404 FNMAGGLTQVTLEVQG-KVKWTDPG-RACIP 432
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Frame = -1
Query: 534 NPGPAGSRSL*LASGRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSA 355
+P P G + L +H+ +TLQ HD++ + + ++ +D H
Sbjct: 1281 HPWPGGHVQISLLGTAFHDSSGETGKTLQ--AHDSDASQSLDVSLPNKGSQDSHVLP-GF 1337
Query: 354 HHHELGDDVREQDLSGRHSRHPGSVQET-LHPFHVNADDVRATARKN 217
H + D V G H ++ FH N + T+R N
Sbjct: 1338 HDNSPSDHVVPVFHDGAHVEDMSDIRPPGSLGFHSNTNSSHETSRNN 1384
>SB_25713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 435 DNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGD 334
DN+++ II E +ED H L H E+ D
Sbjct: 3 DNKENAEIIYSYETEEYEDRHMSELHRHGEEVQD 36
>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 276 ETLHPFHVNADDVRATARKNTMVNMTPGATKSVNEGF 166
E ++ F +A+DV A+ R NT ++M P N F
Sbjct: 115 ERINFFGEDAEDVLASGRPNTPISMAPYIAPDENRNF 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,186,795
Number of Sequences: 59808
Number of extensions: 454819
Number of successful extensions: 1557
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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