Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0539.Seq
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein (sp... 32 0.42
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.55
U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical pr... 31 0.55
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 30 1.3
AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arr... 30 1.3
Z93396-5|CAB07714.1| 633|Caenorhabditis elegans Hypothetical pr... 29 2.2
DQ645956-1|ABG36764.1| 624|Caenorhabditis elegans molting prote... 29 2.2
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 29 2.9
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 29 2.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 29 2.9
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 29 2.9
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 29 2.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.9
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 29 2.9
Z77655-6|CAB01139.1| 351|Caenorhabditis elegans Hypothetical pr... 28 5.1
U75587-1|AAB48299.1| 351|Caenorhabditis elegans caveolin-2 prot... 28 5.1
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 28 6.8
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 27 9.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 27 9.0
>U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform c protein.
Length = 189
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 474 EAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDE 376
E HAA T+ H DDVP +LD H H+++
Sbjct: 28 ENHAAMTVMDRDH--HDDVPALLDVVHVLHQED 58
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/84 (26%), Positives = 32/84 (38%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 310
R + AQ Q+Q + P + H +EH+RRL H + R Q+
Sbjct: 673 RQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQE-- 730
Query: 309 GRHSRHPGSVQETLHPFHVNADDV 238
SR Q LH V + +V
Sbjct: 731 -EESRARALQQSLLHASQVESTEV 753
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/84 (26%), Positives = 32/84 (38%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 310
R + AQ Q+Q + P + H +EH+RRL H + R Q+
Sbjct: 673 RQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQE-- 730
Query: 309 GRHSRHPGSVQETLHPFHVNADDV 238
SR Q LH V + +V
Sbjct: 731 -EESRARALQQSLLHASQVESTEV 753
>U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical
protein F53A9.8 protein.
Length = 87
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 399 EHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQETLH 265
EH + + +H HHHE D E G H H G +T H
Sbjct: 5 EHGHGDGDHHDHHDEHHHE---DHHEHGADGEHVHHAGDHCDTQH 46
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 405 DAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRH--SRHPGSVQETLH 265
D +H H DEH HHE G D +G H ++H G+ Q H
Sbjct: 10 DGDHHDHHDEHHHE---DHHEHGADGEHVHHAGDHCDTQHGGNHQAGEH 55
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Frame = -1
Query: 486 YHEPEAHAAQTLQQSQHDNED-DVPIILDAEHRYHEDEHQRRLSAHHHELGDDVR-EQDL 313
+H PE+ + + D+ + P++ + E + + E D+ EQ+
Sbjct: 2792 HHMPESPIEHEKETEEFDHSHPESPVLSEKEREHQVTSETTTTTTVTREYNDEPEDEQEH 2851
Query: 312 SGRHSRHPGSVQETLHPFHVNADDVRATARK 220
G HS P S E HP V R+
Sbjct: 2852 QGPHSPAPSSHTEAEHPHIVETTTTTTVTRE 2882
>AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arrest
at two-fold protein6 protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -1
Query: 408 LDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQETLHPFHVNADDVRAT 229
L + + EDEH + AHH D+V E +L GR + V + ++R
Sbjct: 28 LSRKKKAPEDEHGNQGGAHHATDEDEVLELELEGREALDQSLVPVLARNIWLEEGEIRRY 87
Query: 228 ARKNT 214
K T
Sbjct: 88 LTKET 92
>Z93396-5|CAB07714.1| 633|Caenorhabditis elegans Hypothetical
protein ZC15.7 protein.
Length = 633
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 568 ITPLSSSVG*NEPRASWIAFALARKRPISRTR 473
I PL +VG N P+A + L +K+P+S+TR
Sbjct: 213 IIPLMCAVGVNLPQAIPVIRFLEKKKPVSKTR 244
>DQ645956-1|ABG36764.1| 624|Caenorhabditis elegans molting protein
MLT-4 protein.
Length = 624
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 568 ITPLSSSVG*NEPRASWIAFALARKRPISRTR 473
I PL +VG N P+A + L +K+P+S+TR
Sbjct: 213 IIPLMCAVGVNLPQAIPVIRFLEKKKPVSKTR 244
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 410 FLTPNTDIMKMSTSAVCPHITTNWVTTC-ENRIS 312
F NT ++ STS P +TN V+ C + RIS
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDRRIS 318
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 310
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 12 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 68
Query: 309 GRHSRHPGSVQETLHPFHVN 250
H +H +Q + H + N
Sbjct: 69 PHHQQHSQHLQHSHHKTYQN 88
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 310
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 1652 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 1708
Query: 309 GRHSRHPGSVQETLHPFHVN 250
H +H +Q + H + N
Sbjct: 1709 PHHQQHSQHLQHSHHKTYQN 1728
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 310
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 1753 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 1809
Query: 309 GRHSRHPGSVQETLHPFHVN 250
H +H +Q + H + N
Sbjct: 1810 PHHQQHSQHLQHSHHKTYQN 1829
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 310
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 1753 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 1809
Query: 309 GRHSRHPGSVQETLHPFHVN 250
H +H +Q + H + N
Sbjct: 1810 PHHQQHSQHLQHSHHKTYQN 1829
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRY---HEDEHQRRLSAHH-HELGDD--- 331
++H+ A ++ + S + + E ++ H + H+ + AHH H+ G+
Sbjct: 333 KHHKKAASSSSSSSSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKEGEHHEH 392
Query: 330 VREQDLSGRHSRHPGSVQETLH-PFH 256
D G H RH G T H P H
Sbjct: 393 AAHHDEHGVHHRHHGEHHGTHHSPAH 418
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 410 FLTPNTDIMKMSTSAVCPHITTNWVTTC-ENRIS 312
F NT ++ STS P +TN V+ C + RIS
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDRRIS 318
>Z77655-6|CAB01139.1| 351|Caenorhabditis elegans Hypothetical
protein C56A3.7 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELG----DDVRE 322
R + E+ Q Q+D DD+ + DA + H HH G D V E
Sbjct: 3 RQNTSESDNTQRPPIPQYDTVDDIDELTDAMDKEDHHHHHHHHEHHHQHQGIAQYDTVEE 62
Query: 321 -QDLSGRHSR-----HPGSVQETLHPFHVNADDV 238
+ L H R + Q HP + N DD+
Sbjct: 63 VETLETVHHRTSLNQEVPTPQRRSHPQYDNLDDI 96
>U75587-1|AAB48299.1| 351|Caenorhabditis elegans caveolin-2
protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Frame = -1
Query: 489 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELG----DDVRE 322
R + E+ Q Q+D DD+ + DA + H HH G D V E
Sbjct: 3 RQNTSESDNTQRPPIPQYDTVDDIDELTDAMDKEDHHHHHHHHEHHHQHQGIAQYDTVEE 62
Query: 321 -QDLSGRHSR-----HPGSVQETLHPFHVNADDV 238
+ L H R + Q HP + N DD+
Sbjct: 63 VETLETVHHRTSLNQEVPTPQRRSHPQYDNLDDI 96
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 551 QRGVERTQGQLDRV-RSSSQAADITNPKHMPH 459
++ + RT Q + V R SSQ+ + +PK +PH
Sbjct: 583 KQAISRTNAQRESVERESSQSPQLYDPKRIPH 614
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 551 QRGVERTQGQLDRV-RSSSQAADITNPKHMPH 459
++ + RT Q + V R SSQ+ + +PK +PH
Sbjct: 583 KQAISRTNAQRESVERESSQSPQLYDPKRIPH 614
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = -1
Query: 486 YHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSG 307
+HE H +Q +H+ + +D + + Q+RL + HE +++Q +
Sbjct: 974 HHEELVHQQPLKRQMEHEKMQQQNVSIDEKFMMYHQNLQQRLQ-YEHEQQMQIQKQKVQE 1032
Query: 306 RH 301
+H
Sbjct: 1033 QH 1034
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 531 PGPAGSRSL*LASGRYHEPEAHAAQTLQQSQHDNEDDVPIILDAE 397
PGP+GS+S E +A + Q S + EDD ++ + E
Sbjct: 547 PGPSGSQSNPEPQDEEENAEQQSANSSQSSAAEEEDDEHVVPENE 591
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Frame = -1
Query: 486 YHEPEAHAAQTLQQSQHDNED-DVPIILDAEHRYHEDEHQRRLSAHHHELGDDVR-EQDL 313
+H PE+ + + D+ + P++ + E + E D+ EQ+
Sbjct: 2792 HHMPESPIEHEKETEEFDHSHPESPVLSEKERDDQVTSETTTTTTVTREYNDEPEDEQEH 2851
Query: 312 SGRHSRHPGSVQETLHPFHVNADDVRATARK 220
G HS P S E HP V R+
Sbjct: 2852 QGPHSPAPSSHTEAEHPHIVETTTTTTVTRE 2882
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,299
Number of Sequences: 27780
Number of extensions: 316134
Number of successful extensions: 1285
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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