Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0539.Seq
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 524 GPGFVLPHAAAERGDLAHRRDALDPALRVPLP 619
           GP   L  AAA +  LA  R+    +  +PLP
Sbjct: 197 GPSKKLAKAAASKAALAKLRNVHSSSFCIPLP 228


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 470 HMPHRPCSKVSMITKTMFPLFLTPNTDIMKMSTSAVCPHITTNWV 336
           H    PCS           L L  N  I+ ++ S     ++T W+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 470 HMPHRPCSKVSMITKTMFPLFLTPNTDIMKMSTSAVCPHITTNWV 336
           H    PCS           L L  N  I+ ++ S     ++T W+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 470 HMPHRPCSKVSMITKTMFPLFLTPNTDIMKMSTSAVCPHITTNWV 336
           H    PCS           L L  N  I+ ++ S     ++T W+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/54 (18%), Positives = 19/54 (35%)
 Frame = -1

Query: 447 QSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPG 286
           Q  H      P +   + ++     Q+ L AH   +    ++Q  +      PG
Sbjct: 167 QMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPG 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,341
Number of Sequences: 438
Number of extensions: 4102
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)